h1. Analysis Code

Please put any code that you have written to perform analysis and reconstruction tasks plots etc into the table below along with a description of what it does and how and the language it is written in.

h2. Useful Code

|_.Code        |_.Language      |_.Description             |_. date         |_.name     |

| bin/utilities/data_tracker_verify.py | Python | Supports argparse interface (i.e. has --help flags!).

                                                  Runs over a maus reconstructed data file and produces many 10s of plots

                                                  describing the behaviour of various components of the tracker reconstruction.

                                                  If you want a quick check of how the data looks - this is a good place to start! | 09/12/2015 | Christopher Hunt |

|"Bad Channel Analysis":http://micewww.pp.rl.ac.uk/attachments/5533/bad_channel.py|Python|MAUS must be sourced, must be run over a processed data file, and configuration variables at the top of the script must be set to point to data.  Script calls in MAUS root file and plots a Gaussian or linear fit over each station hit profile.  Channels that are outside set limits are added to a bad channel list.  Script removes bad channels and recursively fits|01/19/2016|Christopher Heidt|

|blah.py       |Python          |What it does              | 12/12/99       |  nameX    |

|              |                |                          |                |  nameY    |

h2. Final Script Development

OnRec and OnMon are visible through MAUS directly

|_.Code                               |_.Language  |_.Description                                                             |_. date   |

| https://github.com/e-overton/mice-tracker-calibration                | Python     | Calibration Script / Tools to be run and checked by experts. TODO: Automatic (shifter) running. |28/10/15 |

| attachment:ReconstructionPlots.py   |Python      | Python Script (or eventually an Analysis Package)of Reconstruction Plots |28/10/15 |

| DataValidation.py                   | Python     | Script to be run once per run and checked by shifters to check the 

                                                     validity of the data and that the calibrations are valid.  Then a final 

                                                     line that based on those checks and tolerances says whether the run is 

                                                     good for the tracker or not. In Physics Devel.                           |28/10/15 |

| attachment:scifi_run_summary_plots.py | Python | Python script producing various data quality plots, takes a maus_output.root file as an argument |29/10/15 |