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Bug #1406 » onrec01-application_tests_fixcabling.log

application tests on onrec01 after cabling fix - Rajaram, Durga, 05 February 2014 06:31

 
1 
Error in <TGClient::TGClient>: can't open display "heplnv150.pp.rl.ac.uk:0.0", switching to batch mode...
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 In case you run from a remote ssh session, reconnect with ssh -Y
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Check that analyze_data_online makes good histos for full run ... SKIP: Skip - online is not available
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Check that the default parameters produce sensible output ... Error in <TGClient::TGClient>: can't open display "heplnv150.pp.rl.ac.uk:0.0", switching to batch mode...
5 
 In case you run from a remote ssh session, reconnect with ssh -Y
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Placing Box of type Box position: (0,0,0) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 0.001 m^3,  material: lH2 mass (excl daughters): 0.0708 kg
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Setting the phase
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Made 0 attempts to phase 0 cavities with 0 remaining
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WARNING : The first event is not a START_OF_RUN. Spill count and Event count not accurate.
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Written 1 event(s) to file.
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Written 1 event(s) to file.
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Written 26 event(s) to file.
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Written 1 event(s) to file.
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Written 1 event(s) to file.
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>Server:  MICE Production Server - Public read only interface 1.0.0.0
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Welcome to MAUS:
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	Process ID (PID): 2061
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	Program Arguments: ['/home/mice/MAUS/.maus_release/bin/analyze_data_offline.py', '-output_root_file_name', '/home/mice/MAUS/.maus_release/tmp/test_analyze_data_offline.root']
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	Version: MAUS release version 0.7.3
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Initialising Globals
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Initiating Execution
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OUTPUT: Setting up outputer
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Writing JobHeader...
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INPUT: Setting up input
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PIPELINE: Get event, TRANSFORM, MERGE, OUTPUT, repeat
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HINT: MAUS will process 1 event only at first...
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MERGE: Setting up merger
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TRANSFORM: Setting up transformer
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TRANSFORM/MERGE/OUTPUT:  Processed 1 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 2 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 3 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 4 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 5 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 6 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 7 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 8 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 9 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 10 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 11 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 12 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 13 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 14 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 15 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 16 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 17 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 18 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 19 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 20 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 21 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 22 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 23 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 24 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 25 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 26 events so far, 0 events in buffer.
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TRANSFORM: Shutting down transformer
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MERGE: Shutting down merger
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INPUT: Shutting down inputer
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OUTPUT: Shutting down outputer
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Clearing Globals
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DONE
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Error in <TGClient::TGClient>: can't open display "heplnv150.pp.rl.ac.uk:0.0", switching to batch mode...
62 
 In case you run from a remote ssh session, reconnect with ssh -Y
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Placing Box of type Box position: (0,0,0) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 0.001 m^3,  material: lH2 mass (excl daughters): 0.0708 kg
64 
Setting the phase
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Made 0 attempts to phase 0 cavities with 0 remaining
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Failed to find event 1 in file.
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Failed to find event 1 in file.
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Failed to find event 26 in file.
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Failed to find event 1 in file.
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Failed to find event 1 in file.
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Welcome to MAUS:
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	Process ID (PID): 3192
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	Program Arguments: ['/home/mice/MAUS/.maus_release/bin/utilities/root_to_json.py', '-input_root_file_name', '/home/mice/MAUS/.maus_release/tmp/test_analyze_data_offline.root', '-output_json_file_name', '/home/mice/MAUS/.maus_release/tmp/test_analyze_data_offline.json']
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	Version: MAUS release version 0.7.3
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Initialising Globals
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Initiating Execution
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OUTPUT: Setting up outputer
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Writing JobHeader...
79 
INPUT: Setting up input
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PIPELINE: Get event, TRANSFORM, MERGE, OUTPUT, repeat
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HINT: MAUS will process 1 event only at first...
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TRANSFORM/MERGE/OUTPUT:  Processed 1 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 2 events so far, 1 events in buffer.
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MERGE: Setting up merger
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TRANSFORM: Setting up transformer
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TRANSFORM/MERGE/OUTPUT:  Processed 3 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 4 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 5 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 6 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 7 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 8 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 9 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 10 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 11 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 12 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 13 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 14 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 15 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 16 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 17 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 18 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 19 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 20 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 21 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 22 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 23 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 24 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 25 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 26 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 27 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 28 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 29 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 30 events so far, 0 events in buffer.
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TRANSFORM: Shutting down transformer
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MERGE: Shutting down merger
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INPUT: Shutting down inputer
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OUTPUT: Shutting down outputer
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Clearing Globals
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DONE
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ok
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[2014-02-05 01:16:58,725: WARNING/MainProcess] Traceback (most recent call last):
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[2014-02-05 01:16:58,725: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/bin/celeryd", line 8, in <module>
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[2014-02-05 01:16:58,725: WARNING/MainProcess] load_entry_point('celery==2.5.5', 'console_scripts', 'celeryd')()
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[2014-02-05 01:16:58,725: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/celery-2.5.5-py2.7.egg/celery/bin/celeryd.py", line 201, in main
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[2014-02-05 01:16:58,725: WARNING/MainProcess] worker.execute_from_commandline()
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[2014-02-05 01:16:58,725: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/celery-2.5.5-py2.7.egg/celery/bin/base.py", line 87, in execute_from_commandline
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[2014-02-05 01:16:58,726: WARNING/MainProcess] return self.handle_argv(prog_name, argv[1:])
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[2014-02-05 01:16:58,726: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/celery-2.5.5-py2.7.egg/celery/bin/base.py", line 125, in handle_argv
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[2014-02-05 01:16:58,726: WARNING/MainProcess] return self.run(*args, **options)
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[2014-02-05 01:16:58,726: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/celery-2.5.5-py2.7.egg/celery/bin/celeryd.py", line 101, in run
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[2014-02-05 01:16:58,726: WARNING/MainProcess] return self.app.Worker(**kwargs).run()
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[2014-02-05 01:16:58,726: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/celery-2.5.5-py2.7.egg/celery/apps/worker.py", line 137, in run
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[2014-02-05 01:16:58,727: WARNING/MainProcess] self.purge_messages()
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[2014-02-05 01:16:58,727: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/celery-2.5.5-py2.7.egg/celery/apps/worker.py", line 173, in purge_messages
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[2014-02-05 01:16:58,727: WARNING/MainProcess] count = self.app.control.discard_all()
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[2014-02-05 01:16:58,727: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/celery-2.5.5-py2.7.egg/celery/task/control.py", line 115, in discard_all
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[2014-02-05 01:16:58,727: WARNING/MainProcess] return self.app.amqp.get_task_consumer(connection=conn)\
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[2014-02-05 01:16:58,727: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/celery-2.5.5-py2.7.egg/celery/app/amqp.py", line 335, in get_task_consumer
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[2014-02-05 01:16:58,727: WARNING/MainProcess] **kwargs)
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[2014-02-05 01:16:58,728: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/kombu-2.1.8-py2.7.egg/kombu/compat.py", line 183, in __init__
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[2014-02-05 01:16:58,728: WARNING/MainProcess] self.backend = connection.channel()
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[2014-02-05 01:16:58,728: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/kombu-2.1.8-py2.7.egg/kombu/connection.py", line 151, in channel
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[2014-02-05 01:16:58,728: WARNING/MainProcess] chan = self.transport.create_channel(self.connection)
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[2014-02-05 01:16:58,728: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/kombu-2.1.8-py2.7.egg/kombu/connection.py", line 574, in connection
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[2014-02-05 01:16:58,729: WARNING/MainProcess] self._connection = self._establish_connection()
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[2014-02-05 01:16:58,729: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/kombu-2.1.8-py2.7.egg/kombu/connection.py", line 533, in _establish_connection
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[2014-02-05 01:16:58,729: WARNING/MainProcess] conn = self.transport.establish_connection()
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[2014-02-05 01:16:58,729: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/kombu-2.1.8-py2.7.egg/kombu/transport/amqplib.py", line 279, in establish_connection
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[2014-02-05 01:16:58,729: WARNING/MainProcess] connect_timeout=conninfo.connect_timeout)
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[2014-02-05 01:16:58,729: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/kombu-2.1.8-py2.7.egg/kombu/transport/amqplib.py", line 89, in __init__
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[2014-02-05 01:16:58,730: WARNING/MainProcess] super(Connection, self).__init__(*args, **kwargs)
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[2014-02-05 01:16:58,730: WARNING/MainProcess] File "build/bdist.linux-x86_64/egg/amqplib/client_0_8/connection.py", line 129, in __init__
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[2014-02-05 01:16:58,730: WARNING/MainProcess] File "build/bdist.linux-x86_64/egg/amqplib/client_0_8/transport.py", line 281, in create_transport
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[2014-02-05 01:16:58,730: WARNING/MainProcess] File "build/bdist.linux-x86_64/egg/amqplib/client_0_8/transport.py", line 85, in __init__
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[2014-02-05 01:16:58,731: WARNING/MainProcess] socket
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[2014-02-05 01:16:58,731: WARNING/MainProcess] .
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[2014-02-05 01:16:58,731: WARNING/MainProcess] error
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[2014-02-05 01:16:58,731: WARNING/MainProcess] :
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[2014-02-05 01:16:58,731: WARNING/MainProcess] [Errno 111] Connection refused
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[2014-02-05 01:16:58,731: INFO/MainProcess] process shutting down
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Test birth broadcast command. ... SKIP: Skip - RabbitMQ seems to be down
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Test birth broadcast command with an invalid JSON ... SKIP: Skip - RabbitMQ seems to be down
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Test birth broadcast command with an invalid transform name. ... SKIP: Skip - RabbitMQ seems to be down
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Test birth broadcast command with a mismatched MAUS version. ... SKIP: Skip - RabbitMQ seems to be down
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Test birth broadcast command where the transform returns ... SKIP: Skip - RabbitMQ seems to be down
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Test death broadcast command. ... SKIP: Skip - RabbitMQ seems to be down
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Test death broadcast command where the transform returns ... SKIP: Skip - RabbitMQ seems to be down
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Test death broadcast command where the transform throws ... SKIP: Skip - RabbitMQ seems to be down
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Test process command. ... SKIP: Skip - RabbitMQ seems to be down
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Test process command fails after death has been called. ... SKIP: Skip - RabbitMQ seems to be down
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Test process timeout. ... SKIP: Skip - RabbitMQ seems to be down
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Get everything in bin/examples and check it runs with returncode 0 ... Traceback (most recent call last):
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  File "/home/mice/MAUS/.maus_release/tests/integration/test_examples/test_examples.py", line 46, in move_images
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    os.mkdir(plot_dir)
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OSError: [Errno 17] File exists: '/home/mice/MAUS/.maus_release/tests/integration/plots/examples'
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Traceback (most recent call last):
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  File "/home/mice/MAUS/.maus_release/tests/integration/test_examples/test_examples.py", line 52, in move_images
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    os.mkdir(plot_dir)
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OSError: [Errno 17] File exists: '/home/mice/MAUS/.maus_release/tests/integration/plots/examples/load_json_file'
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Traceback (most recent call last):
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  File "/home/mice/MAUS/.maus_release/tests/integration/test_examples/test_examples.py", line 46, in move_images
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    os.mkdir(plot_dir)
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OSError: [Errno 17] File exists: '/home/mice/MAUS/.maus_release/tests/integration/plots/examples'
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Traceback (most recent call last):
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  File "/home/mice/MAUS/.maus_release/tests/integration/test_examples/test_examples.py", line 52, in move_images
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    os.mkdir(plot_dir)
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OSError: [Errno 17] File exists: '/home/mice/MAUS/.maus_release/tests/integration/plots/examples/configuration_db_example'
188 
Traceback (most recent call last):
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  File "/home/mice/MAUS/.maus_release/tests/integration/test_examples/test_examples.py", line 46, in move_images
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    os.mkdir(plot_dir)
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OSError: [Errno 17] File exists: '/home/mice/MAUS/.maus_release/tests/integration/plots/examples'
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Traceback (most recent call last):
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  File "/home/mice/MAUS/.maus_release/tests/integration/test_examples/test_examples.py", line 52, in move_images
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    os.mkdir(plot_dir)
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OSError: [Errno 17] File exists: '/home/mice/MAUS/.maus_release/tests/integration/plots/examples/load_root_file'
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Traceback (most recent call last):
197 
  File "/home/mice/MAUS/.maus_release/tests/integration/test_examples/test_examples.py", line 46, in move_images
198 
    os.mkdir(plot_dir)
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OSError: [Errno 17] File exists: '/home/mice/MAUS/.maus_release/tests/integration/plots/examples'
200 
Traceback (most recent call last):
201 
  File "/home/mice/MAUS/.maus_release/tests/integration/test_examples/test_examples.py", line 52, in move_images
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    os.mkdir(plot_dir)
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OSError: [Errno 17] File exists: '/home/mice/MAUS/.maus_release/tests/integration/plots/examples/simple_scalers_example'
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Traceback (most recent call last):
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  File "/home/mice/MAUS/.maus_release/tests/integration/test_examples/test_examples.py", line 46, in move_images
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    os.mkdir(plot_dir)
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OSError: [Errno 17] File exists: '/home/mice/MAUS/.maus_release/tests/integration/plots/examples'
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Traceback (most recent call last):
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  File "/home/mice/MAUS/.maus_release/tests/integration/test_examples/test_examples.py", line 52, in move_images
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    os.mkdir(plot_dir)
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OSError: [Errno 17] File exists: '/home/mice/MAUS/.maus_release/tests/integration/plots/examples/make_field_map'
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rm load_root_file;
213 
rm *.png;
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Running with /home/mice/MAUS/.maus_release on
215 
Linux miceonrec01.micenet.rl.ac.uk 2.6.18-308.4.1.el5 #1 SMP Tue Apr 17 14:33:50 EDT 2012 x86_64 x86_64 x86_64 GNU/Linux
216 
g++ load_root_file.cc -o load_root_file \
217 
	                      -I/home/mice/MAUS/.maus_release/ \
218 
	                      -I/home/mice/MAUS/.maus_release/src/common_cpp \
219 
	                      -I/home/mice/MAUS/.maus_release/src/legacy \
220 
	                      -I/home/mice/MAUS/.maus_release/third_party/install/include \
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	                      -I/home/mice/MAUS/.maus_release/third_party/build/root_v5.34.07/include \
222 
	                      -L/home/mice/MAUS/.maus_release/build/ \
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	                      `root-config --ldflags` \
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	                      `/home/mice/MAUS/.maus_release/third_party/build/root_v5.34.07/bin/root-config --glibs` \
225 
	                      -lMausCpp \
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	                       -Wl,--no-as-needed
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ok
228 
Check that we can calculate optics beta function correctly; plot output ... Setting the phase
229 
Made 0 attempts to phase 0 cavities with 0 remaining
230 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,-5250) rotationVector: (0,0,1) angle: 0 name: Field1
231 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,-4500) rotationVector: (0,0,1) angle: 0 name: Field2
232 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,-3750) rotationVector: (0,0,1) angle: 0 name: Field3
233 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,-3000) rotationVector: (0,0,1) angle: 0 name: Field4
234 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,-2250) rotationVector: (0,0,1) angle: 0 name: Field5
235 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,-1500) rotationVector: (0,0,1) angle: 0 name: Field6
236 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,-750) rotationVector: (0,0,1) angle: 0 name: Field7
237 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,0) rotationVector: (0,0,1) angle: 0 name: Field8
238 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,750) rotationVector: (0,0,1) angle: 0 name: Field9
239 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,1500) rotationVector: (0,0,1) angle: 0 name: Field10
240 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,2250) rotationVector: (0,0,1) angle: 0 name: Field11
241 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,3000) rotationVector: (0,0,1) angle: 0 name: Field12
242 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,3750) rotationVector: (0,0,1) angle: 0 name: Field13
243 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,4500) rotationVector: (0,0,1) angle: 0 name: Field14
244 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,5250) rotationVector: (0,0,1) angle: 0 name: Field15
245 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,6000) rotationVector: (0,0,1) angle: 0 name: Field16
246 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,6750) rotationVector: (0,0,1) angle: 0 name: Field17
247 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,7500) rotationVector: (0,0,1) angle: 0 name: Field18
248 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,8250) rotationVector: (0,0,1) angle: 0 name: Field19
249 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,9000) rotationVector: (0,0,1) angle: 0 name: Field20
250 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,9750) rotationVector: (0,0,1) angle: 0 name: Field21
251 
Looking for optimisation requests
252 
Running beam envelope through
253 
Finding TrackingDerivative envelope functions
254 
Setting the phase
255 
Made 0 attempts to phase 0 cavities with 0 remaining
256 
done
257 
Info in <TCanvas::Print>: png file /home/mice/MAUS/.maus_release/tests/integration/plots/optics/mapping_optics.png has been created
258 
Setting the phase
259 
Made 0 attempts to phase 0 cavities with 0 remaining
260 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,-5250) rotationVector: (0,0,1) angle: 0 name: Field1
261 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,-4500) rotationVector: (0,0,1) angle: 0 name: Field2
262 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,-3750) rotationVector: (0,0,1) angle: 0 name: Field3
263 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,-3000) rotationVector: (0,0,1) angle: 0 name: Field4
264 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,-2250) rotationVector: (0,0,1) angle: 0 name: Field5
265 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,-1500) rotationVector: (0,0,1) angle: 0 name: Field6
266 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,-750) rotationVector: (0,0,1) angle: 0 name: Field7
267 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,0) rotationVector: (0,0,1) angle: 0 name: Field8
268 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,750) rotationVector: (0,0,1) angle: 0 name: Field9
269 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,1500) rotationVector: (0,0,1) angle: 0 name: Field10
270 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,2250) rotationVector: (0,0,1) angle: 0 name: Field11
271 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,3000) rotationVector: (0,0,1) angle: 0 name: Field12
272 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,3750) rotationVector: (0,0,1) angle: 0 name: Field13
273 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,4500) rotationVector: (0,0,1) angle: 0 name: Field14
274 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,5250) rotationVector: (0,0,1) angle: 0 name: Field15
275 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,6000) rotationVector: (0,0,1) angle: 0 name: Field16
276 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,6750) rotationVector: (0,0,1) angle: 0 name: Field17
277 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,7500) rotationVector: (0,0,1) angle: 0 name: Field18
278 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,8250) rotationVector: (0,0,1) angle: 0 name: Field19
279 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,9000) rotationVector: (0,0,1) angle: 0 name: Field20
280 
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,9750) rotationVector: (0,0,1) angle: 0 name: Field21
281 
Looking for optimisation requests
282 
Setting the phase
283 
Made 0 attempts to phase 0 cavities with 0 remaining
284 
@Beta_T: 750  ** Score1: 28272.9 Score2: 100.169  ** Total: 28373
285 
@Beta_T: 759.978  ** Score1: 33951.3 Score2: 120.214  ** Total: 34071.5
286 
@Beta_T: 745.997  ** Score1: 26123.7 Score2: 92.5806  ** Total: 26216.3
287 
@Beta_T: 733.946  ** Score1: 20114.8 Score2: 71.3575  ** Total: 20186.1
288 
@Beta_T: 697.482  ** Score1: 6413.16 Score2: 22.8962  ** Total: 6436.06
289 
@Beta_T: 586.504  ** Score1: 16716.5 Score2: 58.2668  ** Total: 16774.8
290 
@Beta_T: 644.214  ** Score1: 250.37 Score2: 0.816117  ** Total: 251.186
291 
@Beta_T: 590.627  ** Score1: 14591.8 Score2: 50.8281  ** Total: 14642.6
292 
@Beta_T: 590.627  ** Score1: 14591.8 Score2: 50.8281  ** Total: 14642.6
293 
@Beta_T: 670.915  ** Score1: 1100.68 Score2: 4.0115  ** Total: 1104.69
294 
@Beta_T: 617.433  ** Score1: 4499.98 Score2: 15.5519  ** Total: 4515.53
295 
@Beta_T: 657.578  ** Score1: 80.0686 Score2: 0.320164  ** Total: 80.3887
296 
@Beta_T: 670.915  ** Score1: 1100.68 Score2: 4.0115  ** Total: 1104.69
297 
@Beta_T: 650.898  ** Score1: 11.3457 Score2: 0.0271198  ** Total: 11.3728
298 
@Beta_T: 644.214  ** Score1: 250.37 Score2: 0.816117  ** Total: 251.186
299 
@Beta_T: 654.239  ** Score1: 7.87927 Score2: 0.0406385  ** Total: 7.91991
300 
@Beta_T: 657.578  ** Score1: 80.0686 Score2: 0.320164  ** Total: 80.3887
301 
@Beta_T: 652.569  ** Score1: 0.0763787 Score2: 0.000350043  ** Total: 0.0767287
302 
@Beta_T: 650.898  ** Score1: 11.3457 Score2: 0.0271198  ** Total: 11.3728
303 
@Beta_T: 653.404  ** Score1: 1.60375 Score2: 0.012147  ** Total: 1.61589
304 
@Beta_T: 651.734  ** Score1: 3.31704 Score2: 0.00531759  ** Total: 3.32236
305 
@Beta_T: 652.986  ** Score1: 0.245303 Score2: 0.00415732  ** Total: 0.24946
306 
@Beta_T: 652.151  ** Score1: 1.09946 Score2: 0.000733881  ** Total: 1.10019
307 
@Beta_T: 652.778  ** Score1: 0.0119955 Score2: 0.00173034  ** Total: 0.0137258
308 
@Beta_T: 652.986  ** Score1: 0.245303 Score2: 0.00415732  ** Total: 0.24946
309 
@Beta_T: 652.673  ** Score1: 0.00695634 Score2: 0.000909286  ** Total: 0.00786563
310 
@Beta_T: 652.569  ** Score1: 0.0763787 Score2: 0.000350043  ** Total: 0.0767287
311 
@Beta_T: 652.725  ** Score1: 0.000170663 Score2: 0.00128709  ** Total: 0.00145776
312 
@Beta_T: 652.778  ** Score1: 0.0119955 Score2: 0.00173034  ** Total: 0.0137258
313 
@Beta_T: 652.699  ** Score1: 0.00123689 Score2: 0.00109001  ** Total: 0.0023269
314 
@Beta_T: 652.751  ** Score1: 0.00375707 Score2: 0.00150054  ** Total: 0.0052576
315 
@Beta_T: 652.712  ** Score1: 0.000122158 Score2: 0.00118651  ** Total: 0.00130867
316 
@Beta_T: 652.712  ** Score1: 0.000122158 Score2: 0.00118651  ** Total: 0.00130867
317 
Running beam envelope through
318 
Finding TrackingDerivative envelope functions
319 
Setting the phase
320 
Made 0 attempts to phase 0 cavities with 0 remaining
321 
done
322 
Info in <TCanvas::Print>: png file /home/mice/MAUS/.maus_release/tests/integration/plots/optics/optimiser_optics.png has been created
323 
ok
324 
Check that we have coloured particles ... ok
325 
Check that we have accumulated particles ... ok
326 
Check that we can generate a binomial distribution for event number ... Error in <TGClient::TGClient>: can't open display "heplnv150.pp.rl.ac.uk:0.0", switching to batch mode...
327 
 In case you run from a remote ssh session, reconnect with ssh -Y
328 
Setting the phase
329 
Made 0 attempts to phase 0 cavities with 0 remaining
330 
Written 1 event(s) to file.
331 
Written 1 event(s) to file.
332 
Written 101 event(s) to file.
333 
Written 1 event(s) to file.
334 
Written 1 event(s) to file.
335 
Error in <TGClient::TGClient>: can't open display "heplnv150.pp.rl.ac.uk:0.0", switching to batch mode...
336 
 In case you run from a remote ssh session, reconnect with ssh -Y
337 
Setting the phase
338 
Made 0 attempts to phase 0 cavities with 0 remaining
339 
Failed to find event 1 in file.
340 
Failed to find event 1 in file.
341 
Failed to find event 101 in file.
342 
Failed to find event 1 in file.
343 
Failed to find event 1 in file.
344 
Error in <TGClient::TGClient>: can't open display "heplnv150.pp.rl.ac.uk:0.0", switching to batch mode...
345 
 In case you run from a remote ssh session, reconnect with ssh -Y
346 
Setting the phase
347 
Made 0 attempts to phase 0 cavities with 0 remaining
348 
Written 1 event(s) to file.
349 
Written 1 event(s) to file.
350 
Written 1001 event(s) to file.
351 
Written 1 event(s) to file.
352 
Written 1 event(s) to file.
353 
Error in <TGClient::TGClient>: can't open display "heplnv150.pp.rl.ac.uk:0.0", switching to batch mode...
354 
 In case you run from a remote ssh session, reconnect with ssh -Y
355 
Setting the phase
356 
Made 0 attempts to phase 0 cavities with 0 remaining
357 
Failed to find event 1 in file.
358 
Failed to find event 1 in file.
359 
Failed to find event 1001 in file.
360 
Failed to find event 1 in file.
361 
Failed to find event 1 in file.
362 
Error in <TGClient::TGClient>: can't open display "heplnv150.pp.rl.ac.uk:0.0", switching to batch mode...
363 
 In case you run from a remote ssh session, reconnect with ssh -Y
364 
Setting the phase
365 
Made 0 attempts to phase 0 cavities with 0 remaining
366 
Written 1 event(s) to file.
367 
Written 1 event(s) to file.
368 
Written 2 event(s) to file.
369 
Written 1 event(s) to file.
370 
Written 1 event(s) to file.
371 
Error in <TGClient::TGClient>: can't open display "heplnv150.pp.rl.ac.uk:0.0", switching to batch mode...
372 
 In case you run from a remote ssh session, reconnect with ssh -Y
373 
Setting the phase
374 
Made 0 attempts to phase 0 cavities with 0 remaining
375 
Failed to find event 1 in file.
376 
Failed to find event 1 in file.
377 
Failed to find event 2 in file.
378 
Failed to find event 1 in file.
379 
Failed to find event 1 in file.
380 
Info in <TCanvas::Print>: png file /home/mice/MAUS/.maus_release/tests/integration/plots/beam_maker/binomial_distribution_test.png has been created
381 
ok
382 
Check that the default beam parameters run and produce some number of ... ok
383 
Check that the weight of each sub-beam is close to the expected weight ... ok
384 
Check that no nans appear ... Info in <TCanvas::Print>: png file /home/mice/MAUS/.maus_release/tests/integration/plots/beam_maker/nan_energy_distribution_test.png has been created
385 
ok
386 
Check that beam maker generates sawtooth t distribution correctly ... Info in <TCanvas::Print>: png file /home/mice/MAUS/.maus_release/tests/integration/plots/beam_maker/sawtooth_time_distribution_test.png has been created
387 
ok
388 
Check that beam maker generates uniform t distribution correctly ... Info in <TCanvas::Print>: png file /home/mice/MAUS/.maus_release/tests/integration/plots/beam_maker/uniform_time_distribution_test.png has been created
389 
ok
390 
Check that the weight of each sub-beam is close to the expected weight ... ok
391 
For each "Configuration" file, check that we can load it - by calling ... ok
392 
Checks that no other program is grabbing the MAUS help function ... FAIL
393 
Check that we generate some useful error messages when running ... ok
394 
Check that we can disable particle decay ... ok
395 
Check physics_processes datacard works okay ... ok
396 
Check that reference_physics_processes works okay ... ok
397 
Check that we can set the stepping algorithm okay in Geant4 ... ok
398 
Check that we can run the simulation, make plots ... ok
399 
Run simulation and time execution time. ... ok
400 
Test that the GRID batch script works ... ok
401 
Check that get_beamline_info outputs the info by dates ... ok
402 
Check that get_beamline_info outputs the info by dates ... ok
403 
Check that get_beamline_info outputs the info by run ... ok
404 
Check that get_geometry_ids creates a file with the correct geoms ... Server status is OK
405 
File saved to /home/mice/MAUS/.maus_release/tmp/geometry_ids.txt
406 
ok
407 
Check that get_geometry_ids outputs the geometries ... Server status is OK
408 
File saved to /home/mice/MAUS/.maus_release/tmp/geometry_ids.txt
409 
ok
410 
Check json browser --input-file, --output-file, --indent, -l ... ok
411 
Check json browser -L ... ok
412 
Check json browser --start-line, --end-line ... ok
413 
Check that we can run the offline analysis, convert to root, convert ... Error in <TGClient::TGClient>: can't open display "heplnv150.pp.rl.ac.uk:0.0", switching to batch mode...
414 
 In case you run from a remote ssh session, reconnect with ssh -Y
415 
Placing Box of type Box position: (0,0,0) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 0.001 m^3,  material: lH2 mass (excl daughters): 0.0708 kg
416 
Setting the phase
417 
Made 0 attempts to phase 0 cavities with 0 remaining
418 
WARNING : The first event is not a START_OF_RUN. Spill count and Event count not accurate.
419 
Written 1 event(s) to file.
420 
Written 1 event(s) to file.
421 
Written 26 event(s) to file.
422 
Written 1 event(s) to file.
423 
Written 1 event(s) to file.
424 
>Server:  MICE Production Server - Public read only interface 1.0.0.0
425 
Welcome to MAUS:
426 
	Process ID (PID): 7867
427 
	Program Arguments: ['/home/mice/MAUS/.maus_release/bin/analyze_data_offline.py', '--output_root_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_offline_analysis.root', '--TOF_findTriggerPixelCut', '2.0']
428 
	Version: MAUS release version 0.7.3
429 
Initialising Globals
430 
Initiating Execution
431 
OUTPUT: Setting up outputer
432 
Writing JobHeader...
433 
INPUT: Setting up input
434 
PIPELINE: Get event, TRANSFORM, MERGE, OUTPUT, repeat
435 
HINT: MAUS will process 1 event only at first...
436 
MERGE: Setting up merger
437 
TRANSFORM: Setting up transformer
438 
TRANSFORM/MERGE/OUTPUT:  Processed 1 events so far, 1 events in buffer.
439 
TRANSFORM/MERGE/OUTPUT:  Processed 2 events so far, 1 events in buffer.
440 
TRANSFORM/MERGE/OUTPUT:  Processed 3 events so far, 1 events in buffer.
441 
TRANSFORM/MERGE/OUTPUT:  Processed 4 events so far, 1 events in buffer.
442 
TRANSFORM/MERGE/OUTPUT:  Processed 5 events so far, 1 events in buffer.
443 
TRANSFORM/MERGE/OUTPUT:  Processed 6 events so far, 1 events in buffer.
444 
TRANSFORM/MERGE/OUTPUT:  Processed 7 events so far, 1 events in buffer.
445 
TRANSFORM/MERGE/OUTPUT:  Processed 8 events so far, 1 events in buffer.
446 
TRANSFORM/MERGE/OUTPUT:  Processed 9 events so far, 1 events in buffer.
447 
TRANSFORM/MERGE/OUTPUT:  Processed 10 events so far, 1 events in buffer.
448 
TRANSFORM/MERGE/OUTPUT:  Processed 11 events so far, 1 events in buffer.
449 
TRANSFORM/MERGE/OUTPUT:  Processed 12 events so far, 1 events in buffer.
450 
TRANSFORM/MERGE/OUTPUT:  Processed 13 events so far, 1 events in buffer.
451 
TRANSFORM/MERGE/OUTPUT:  Processed 14 events so far, 1 events in buffer.
452 
TRANSFORM/MERGE/OUTPUT:  Processed 15 events so far, 1 events in buffer.
453 
TRANSFORM/MERGE/OUTPUT:  Processed 16 events so far, 1 events in buffer.
454 
TRANSFORM/MERGE/OUTPUT:  Processed 17 events so far, 1 events in buffer.
455 
TRANSFORM/MERGE/OUTPUT:  Processed 18 events so far, 1 events in buffer.
456 
TRANSFORM/MERGE/OUTPUT:  Processed 19 events so far, 1 events in buffer.
457 
TRANSFORM/MERGE/OUTPUT:  Processed 20 events so far, 1 events in buffer.
458 
TRANSFORM/MERGE/OUTPUT:  Processed 21 events so far, 1 events in buffer.
459 
TRANSFORM/MERGE/OUTPUT:  Processed 22 events so far, 1 events in buffer.
460 
TRANSFORM/MERGE/OUTPUT:  Processed 23 events so far, 1 events in buffer.
461 
TRANSFORM/MERGE/OUTPUT:  Processed 24 events so far, 1 events in buffer.
462 
TRANSFORM/MERGE/OUTPUT:  Processed 25 events so far, 1 events in buffer.
463 
TRANSFORM/MERGE/OUTPUT:  Processed 26 events so far, 0 events in buffer.
464 
TRANSFORM: Shutting down transformer
465 
MERGE: Shutting down merger
466 
INPUT: Shutting down inputer
467 
OUTPUT: Shutting down outputer
468 
Clearing Globals
469 
DONE
470 
Error in <TGClient::TGClient>: can't open display "heplnv150.pp.rl.ac.uk:0.0", switching to batch mode...
471 
 In case you run from a remote ssh session, reconnect with ssh -Y
472 
Placing Box of type Box position: (0,0,0) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 0.001 m^3,  material: lH2 mass (excl daughters): 0.0708 kg
473 
Setting the phase
474 
Made 0 attempts to phase 0 cavities with 0 remaining
475 
Failed to find event 1 in file.
476 
Failed to find event 1 in file.
477 
Failed to find event 26 in file.
478 
Failed to find event 1 in file.
479 
Failed to find event 1 in file.
480 
Welcome to MAUS:
481 
	Process ID (PID): 8957
482 
	Program Arguments: ['/home/mice/MAUS/.maus_release/bin/utilities/root_to_json.py', '--input_root_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_offline_analysis.root', '--output_json_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_offline_analysis_IN.json', '--verbose_level', '1', '--header_and_footer_mode', 'dont_append']
483 
	Version: MAUS release version 0.7.3
484 
Initialising Globals
485 
Initiating Execution
486 
OUTPUT: Setting up outputer
487 
Writing JobHeader...
488 
INPUT: Setting up input
489 
PIPELINE: Get event, TRANSFORM, MERGE, OUTPUT, repeat
490 
HINT: MAUS will process 1 event only at first...
491 
TRANSFORM/MERGE/OUTPUT:  Processed 1 events so far, 1 events in buffer.
492 
TRANSFORM/MERGE/OUTPUT:  Processed 2 events so far, 1 events in buffer.
493 
MERGE: Setting up merger
494 
TRANSFORM: Setting up transformer
495 
TRANSFORM/MERGE/OUTPUT:  Processed 3 events so far, 1 events in buffer.
496 
TRANSFORM/MERGE/OUTPUT:  Processed 4 events so far, 1 events in buffer.
497 
TRANSFORM/MERGE/OUTPUT:  Processed 5 events so far, 1 events in buffer.
498 
TRANSFORM/MERGE/OUTPUT:  Processed 6 events so far, 1 events in buffer.
499 
TRANSFORM/MERGE/OUTPUT:  Processed 7 events so far, 1 events in buffer.
500 
TRANSFORM/MERGE/OUTPUT:  Processed 8 events so far, 1 events in buffer.
501 
TRANSFORM/MERGE/OUTPUT:  Processed 9 events so far, 1 events in buffer.
502 
TRANSFORM/MERGE/OUTPUT:  Processed 10 events so far, 1 events in buffer.
503 
TRANSFORM/MERGE/OUTPUT:  Processed 11 events so far, 1 events in buffer.
504 
TRANSFORM/MERGE/OUTPUT:  Processed 12 events so far, 1 events in buffer.
505 
TRANSFORM/MERGE/OUTPUT:  Processed 13 events so far, 1 events in buffer.
506 
TRANSFORM/MERGE/OUTPUT:  Processed 14 events so far, 1 events in buffer.
507 
TRANSFORM/MERGE/OUTPUT:  Processed 15 events so far, 1 events in buffer.
508 
TRANSFORM/MERGE/OUTPUT:  Processed 16 events so far, 1 events in buffer.
509 
TRANSFORM/MERGE/OUTPUT:  Processed 17 events so far, 1 events in buffer.
510 
TRANSFORM/MERGE/OUTPUT:  Processed 18 events so far, 1 events in buffer.
511 
TRANSFORM/MERGE/OUTPUT:  Processed 19 events so far, 1 events in buffer.
512 
TRANSFORM/MERGE/OUTPUT:  Processed 20 events so far, 1 events in buffer.
513 
TRANSFORM/MERGE/OUTPUT:  Processed 21 events so far, 1 events in buffer.
514 
TRANSFORM/MERGE/OUTPUT:  Processed 22 events so far, 1 events in buffer.
515 
TRANSFORM/MERGE/OUTPUT:  Processed 23 events so far, 1 events in buffer.
516 
TRANSFORM/MERGE/OUTPUT:  Processed 24 events so far, 1 events in buffer.
517 
TRANSFORM/MERGE/OUTPUT:  Processed 25 events so far, 1 events in buffer.
518 
TRANSFORM/MERGE/OUTPUT:  Processed 26 events so far, 1 events in buffer.
519 
TRANSFORM/MERGE/OUTPUT:  Processed 27 events so far, 1 events in buffer.
520 
TRANSFORM/MERGE/OUTPUT:  Processed 28 events so far, 1 events in buffer.
521 
TRANSFORM/MERGE/OUTPUT:  Processed 29 events so far, 1 events in buffer.
522 
TRANSFORM/MERGE/OUTPUT:  Processed 30 events so far, 0 events in buffer.
523 
TRANSFORM: Shutting down transformer
524 
MERGE: Shutting down merger
525 
INPUT: Shutting down inputer
526 
OUTPUT: Shutting down outputer
527 
Clearing Globals
528 
DONE
529 
Error in <TGClient::TGClient>: can't open display "heplnv150.pp.rl.ac.uk:0.0", switching to batch mode...
530 
 In case you run from a remote ssh session, reconnect with ssh -Y
531 
Placing Box of type Box position: (0,0,0) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 0.001 m^3,  material: lH2 mass (excl daughters): 0.0708 kg
532 
Setting the phase
533 
Made 0 attempts to phase 0 cavities with 0 remaining
534 
Written 1 event(s) to file.
535 
Written 1 event(s) to file.
536 
Written 26 event(s) to file.
537 
Written 1 event(s) to file.
538 
Written 1 event(s) to file.
539 
Welcome to MAUS:
540 
	Process ID (PID): 10045
541 
	Program Arguments: ['/home/mice/MAUS/.maus_release/bin/utilities/json_to_root.py', '--input_json_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_offline_analysis_IN.json', '--output_root_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_offline_analysis.root', '--verbose_level', '1', '--header_and_footer_mode', 'dont_append']
542 
	Version: MAUS release version 0.7.3
543 
Initialising Globals
544 
Initiating Execution
545 
OUTPUT: Setting up outputer
546 
Writing JobHeader...
547 
INPUT: Setting up input
548 
PIPELINE: Get event, TRANSFORM, MERGE, OUTPUT, repeat
549 
HINT: MAUS will process 1 event only at first...
550 
TRANSFORM/MERGE/OUTPUT:  Processed 1 events so far, 1 events in buffer.
551 
TRANSFORM/MERGE/OUTPUT:  Processed 2 events so far, 1 events in buffer.
552 
MERGE: Setting up merger
553 
TRANSFORM: Setting up transformer
554 
TRANSFORM/MERGE/OUTPUT:  Processed 3 events so far, 1 events in buffer.
555 
TRANSFORM/MERGE/OUTPUT:  Processed 4 events so far, 1 events in buffer.
556 
TRANSFORM/MERGE/OUTPUT:  Processed 5 events so far, 1 events in buffer.
557 
TRANSFORM/MERGE/OUTPUT:  Processed 6 events so far, 1 events in buffer.
558 
TRANSFORM/MERGE/OUTPUT:  Processed 7 events so far, 1 events in buffer.
559 
TRANSFORM/MERGE/OUTPUT:  Processed 8 events so far, 1 events in buffer.
560 
TRANSFORM/MERGE/OUTPUT:  Processed 9 events so far, 1 events in buffer.
561 
TRANSFORM/MERGE/OUTPUT:  Processed 10 events so far, 1 events in buffer.
562 
TRANSFORM/MERGE/OUTPUT:  Processed 11 events so far, 1 events in buffer.
563 
TRANSFORM/MERGE/OUTPUT:  Processed 12 events so far, 1 events in buffer.
564 
TRANSFORM/MERGE/OUTPUT:  Processed 13 events so far, 1 events in buffer.
565 
TRANSFORM/MERGE/OUTPUT:  Processed 14 events so far, 1 events in buffer.
566 
TRANSFORM/MERGE/OUTPUT:  Processed 15 events so far, 1 events in buffer.
567 
TRANSFORM/MERGE/OUTPUT:  Processed 16 events so far, 1 events in buffer.
568 
TRANSFORM/MERGE/OUTPUT:  Processed 17 events so far, 1 events in buffer.
569 
TRANSFORM/MERGE/OUTPUT:  Processed 18 events so far, 1 events in buffer.
570 
TRANSFORM/MERGE/OUTPUT:  Processed 19 events so far, 1 events in buffer.
571 
TRANSFORM/MERGE/OUTPUT:  Processed 20 events so far, 1 events in buffer.
572 
TRANSFORM/MERGE/OUTPUT:  Processed 21 events so far, 1 events in buffer.
573 
TRANSFORM/MERGE/OUTPUT:  Processed 22 events so far, 1 events in buffer.
574 
TRANSFORM/MERGE/OUTPUT:  Processed 23 events so far, 1 events in buffer.
575 
TRANSFORM/MERGE/OUTPUT:  Processed 24 events so far, 1 events in buffer.
576 
TRANSFORM/MERGE/OUTPUT:  Processed 25 events so far, 1 events in buffer.
577 
TRANSFORM/MERGE/OUTPUT:  Processed 26 events so far, 1 events in buffer.
578 
TRANSFORM/MERGE/OUTPUT:  Processed 27 events so far, 1 events in buffer.
579 
TRANSFORM/MERGE/OUTPUT:  Processed 28 events so far, 1 events in buffer.
580 
TRANSFORM/MERGE/OUTPUT:  Processed 29 events so far, 1 events in buffer.
581 
TRANSFORM/MERGE/OUTPUT:  Processed 30 events so far, 0 events in buffer.
582 
TRANSFORM: Shutting down transformer
583 
MERGE: Shutting down merger
584 
INPUT: Shutting down inputer
585 
OUTPUT: Shutting down outputer
586 
Clearing Globals
587 
DONE
588 
Error in <TGClient::TGClient>: can't open display "heplnv150.pp.rl.ac.uk:0.0", switching to batch mode...
589 
 In case you run from a remote ssh session, reconnect with ssh -Y
590 
Placing Box of type Box position: (0,0,0) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 0.001 m^3,  material: lH2 mass (excl daughters): 0.0708 kg
591 
Setting the phase
592 
Made 0 attempts to phase 0 cavities with 0 remaining
593 
Failed to find event 1 in file.
594 
Failed to find event 1 in file.
595 
Failed to find event 26 in file.
596 
Failed to find event 1 in file.
597 
Failed to find event 1 in file.
598 
Welcome to MAUS:
599 
	Process ID (PID): 11397
600 
	Program Arguments: ['/home/mice/MAUS/.maus_release/bin/utilities/root_to_json.py', '--input_root_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_offline_analysis.root', '--output_json_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_offline_analysis_OUT.json', '--verbose_level', '1', '--header_and_footer_mode', 'dont_append']
601 
	Version: MAUS release version 0.7.3
602 
Initialising Globals
603 
Initiating Execution
604 
OUTPUT: Setting up outputer
605 
Writing JobHeader...
606 
INPUT: Setting up input
607 
PIPELINE: Get event, TRANSFORM, MERGE, OUTPUT, repeat
608 
HINT: MAUS will process 1 event only at first...
609 
TRANSFORM/MERGE/OUTPUT:  Processed 1 events so far, 1 events in buffer.
610 
TRANSFORM/MERGE/OUTPUT:  Processed 2 events so far, 1 events in buffer.
611 
MERGE: Setting up merger
612 
TRANSFORM: Setting up transformer
613 
TRANSFORM/MERGE/OUTPUT:  Processed 3 events so far, 1 events in buffer.
614 
TRANSFORM/MERGE/OUTPUT:  Processed 4 events so far, 1 events in buffer.
615 
TRANSFORM/MERGE/OUTPUT:  Processed 5 events so far, 1 events in buffer.
616 
TRANSFORM/MERGE/OUTPUT:  Processed 6 events so far, 1 events in buffer.
617 
TRANSFORM/MERGE/OUTPUT:  Processed 7 events so far, 1 events in buffer.
618 
TRANSFORM/MERGE/OUTPUT:  Processed 8 events so far, 1 events in buffer.
619 
TRANSFORM/MERGE/OUTPUT:  Processed 9 events so far, 1 events in buffer.
620 
TRANSFORM/MERGE/OUTPUT:  Processed 10 events so far, 1 events in buffer.
621 
TRANSFORM/MERGE/OUTPUT:  Processed 11 events so far, 1 events in buffer.
622 
TRANSFORM/MERGE/OUTPUT:  Processed 12 events so far, 1 events in buffer.
623 
TRANSFORM/MERGE/OUTPUT:  Processed 13 events so far, 1 events in buffer.
624 
TRANSFORM/MERGE/OUTPUT:  Processed 14 events so far, 1 events in buffer.
625 
TRANSFORM/MERGE/OUTPUT:  Processed 15 events so far, 1 events in buffer.
626 
TRANSFORM/MERGE/OUTPUT:  Processed 16 events so far, 1 events in buffer.
627 
TRANSFORM/MERGE/OUTPUT:  Processed 17 events so far, 1 events in buffer.
628 
TRANSFORM/MERGE/OUTPUT:  Processed 18 events so far, 1 events in buffer.
629 
TRANSFORM/MERGE/OUTPUT:  Processed 19 events so far, 1 events in buffer.
630 
TRANSFORM/MERGE/OUTPUT:  Processed 20 events so far, 1 events in buffer.
631 
TRANSFORM/MERGE/OUTPUT:  Processed 21 events so far, 1 events in buffer.
632 
TRANSFORM/MERGE/OUTPUT:  Processed 22 events so far, 1 events in buffer.
633 
TRANSFORM/MERGE/OUTPUT:  Processed 23 events so far, 1 events in buffer.
634 
TRANSFORM/MERGE/OUTPUT:  Processed 24 events so far, 1 events in buffer.
635 
TRANSFORM/MERGE/OUTPUT:  Processed 25 events so far, 1 events in buffer.
636 
TRANSFORM/MERGE/OUTPUT:  Processed 26 events so far, 1 events in buffer.
637 
TRANSFORM/MERGE/OUTPUT:  Processed 27 events so far, 1 events in buffer.
638 
TRANSFORM/MERGE/OUTPUT:  Processed 28 events so far, 1 events in buffer.
639 
TRANSFORM/MERGE/OUTPUT:  Processed 29 events so far, 1 events in buffer.
640 
TRANSFORM/MERGE/OUTPUT:  Processed 30 events so far, 0 events in buffer.
641 
TRANSFORM: Shutting down transformer
642 
MERGE: Shutting down merger
643 
INPUT: Shutting down inputer
644 
OUTPUT: Shutting down outputer
645 
Clearing Globals
646 
DONE
647 
ok
648 
Check that we can run simulate_mice, convert to root, convert back to ... Error in <TGClient::TGClient>: can't open display "heplnv150.pp.rl.ac.uk:0.0", switching to batch mode...
649 
 In case you run from a remote ssh session, reconnect with ssh -Y
650 
Placing BeamLine.dat of type Box position: (0,0,-10283) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 209.641 m^3,  material: Galactic mass (excl daughters): 2.09641e-20 kg
651 
Placing TrackerSolenoid0.dat of type Cylinder position: (0,0,-4783) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 4.2312 m^3,  material: Galactic mass (excl daughters): 4.2312e-22 kg
652 
Placing AbsorberFocusCoil.dat68 of type Tube position: (0,0,-2750) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 1.37239 m^3,  material: Galactic mass (excl daughters): 1.37239e-22 kg
653 
Placing RFCouplingCoilUp.dat of type Cylinder position: (0,0,-1375) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 2.56453 m^3,  material: Galactic mass (excl daughters): 2.56453e-22 kg
654 
Placing AbsorberFocusCoil.dat81 of type Tube position: (0,0,0) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 1.37239 m^3,  material: Galactic mass (excl daughters): 1.37239e-22 kg
655 
Placing RFCouplingCoilDown.dat of type Cylinder position: (0,0,1375) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 2.56453 m^3,  material: Galactic mass (excl daughters): 2.56453e-22 kg
656 
Placing AbsorberFocusCoil.dat of type Tube position: (0,0,2750) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 1.37239 m^3,  material: Galactic mass (excl daughters): 1.37239e-22 kg
657 
Placing SpecVirt.dat of type Cylinder position: (0,0,4783) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 2.82743e-08 m^3,  material: Galactic mass (excl daughters): 2.82743e-30 kg
658 
Placing TrackerSolenoid1.dat of type Cylinder position: (0,0,4783) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 4.2312 m^3,  material: Galactic mass (excl daughters): 4.2312e-22 kg
659 
Placing TOF2.dat of type Box position: (0,0,6524.5) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 0.5625 m^3,  material: AIR mass (excl daughters): 0.677694 kg
660 
Setting the phase ....
661 
Made 4 attempts to phase 8 cavities with 0 remaining
662 
Solenoid Length: 198 Inner Radius: 258 Thickness: 52.8 Current Density: 1  scaleFactor: 104.612 position: (0,0,-3694) rotationVector: (0,0,1) angle: 0 name: Field1
663 
Solenoid Length: 197 Inner Radius: 258 Thickness: 26.4 Current Density: 1  scaleFactor: 161.3 position: (0,0,-4134.5) rotationVector: (0,0,1) angle: 0 name: Field2
664 
Solenoid Length: 110 Inner Radius: 258 Thickness: 61.6 Current Density: 1  scaleFactor: 136.8 position: (0,0,-4534.5) rotationVector: (0,0,1) angle: 0 name: Field3
665 
Solenoid Length: 1294 Inner Radius: 258 Thickness: 22 Current Density: 1  scaleFactor: 146.9 position: (0,0,-5284) rotationVector: (0,0,1) angle: 0 name: Field4
666 
Solenoid Length: 110 Inner Radius: 258 Thickness: 68.2 Current Density: 1  scaleFactor: 142.492 position: (0,0,-6034.5) rotationVector: (0,0,1) angle: 0 name: Field5
667 
Solenoid Length: 210 Inner Radius: 263 Thickness: 84 Current Density: 1  scaleFactor: 113.95 position: (0,0,-2955) rotationVector: (0,0,1) angle: 0 name: Field6
668 
Solenoid Length: 210 Inner Radius: 263 Thickness: 84 Current Density: 1  scaleFactor: -113.95 position: (0,0,-2545) rotationVector: (0,0,1) angle: 0 name: Field7
669 
Solenoid Length: 250 Inner Radius: 725 Thickness: 116 Current Density: 1  scaleFactor: -96.21 position: (0,0,-1375) rotationVector: (0,0,1) angle: 0 name: Field8
670 
Solenoid Length: 210 Inner Radius: 263 Thickness: 84 Current Density: 1  scaleFactor: -113.95 position: (0,0,-205) rotationVector: (0,0,1) angle: 0 name: Field9
671 
Solenoid Length: 210 Inner Radius: 263 Thickness: 84 Current Density: 1  scaleFactor: 113.95 position: (0,0,205) rotationVector: (0,0,1) angle: 0 name: Field10
672 
Solenoid Length: 250 Inner Radius: 725 Thickness: 116 Current Density: 1  scaleFactor: 96.21 position: (0,0,1375) rotationVector: (0,0,1) angle: 0 name: Field11
673 
Solenoid Length: 210 Inner Radius: 263 Thickness: 84 Current Density: 1  scaleFactor: 113.95 position: (0,0,2545) rotationVector: (0,0,1) angle: 0 name: Field12
674 
Solenoid Length: 210 Inner Radius: 263 Thickness: 84 Current Density: 1  scaleFactor: -113.95 position: (0,0,2955) rotationVector: (0,0,1) angle: 0 name: Field13
675 
Solenoid Length: 198 Inner Radius: 258 Thickness: 52.8 Current Density: 1  scaleFactor: 104.612 position: (-1.33364e-13,0,3669.5) rotationVector: (0,-1,0) angle: 180 name: Field14
676 
Solenoid Length: 197 Inner Radius: 258 Thickness: 26.4 Current Density: 1  scaleFactor: 161.3 position: (-7.94183e-14,0,4110) rotationVector: (0,-1,0) angle: 180 name: Field15
677 
Solenoid Length: 110 Inner Radius: 258 Thickness: 61.6 Current Density: 1  scaleFactor: 136.8 position: (-3.04325e-14,0,4510) rotationVector: (0,-1,0) angle: 180 name: Field16
678 
Solenoid Length: 1294 Inner Radius: 258 Thickness: 22 Current Density: 1  scaleFactor: 146.9 position: (6.13548e-14,0,5259.5) rotationVector: (0,-1,0) angle: 180 name: Field17
679 
Solenoid Length: 110 Inner Radius: 258 Thickness: 68.2 Current Density: 1  scaleFactor: 142.492 position: (1.53265e-13,0,6010) rotationVector: (0,-1,0) angle: 180 name: Field18
680 
Multipole Order: 4 Length: 2000 Magnitude: 1e-06 BendingRadius: 0 Height: 500 Width: 500 EndField: Tanh scaleFactor: 1.293 position: (0,0,-10959.5) rotationVector: (0,0,1) angle: 0 name: Field27
681 
Multipole Order: 4 Length: 2000 Magnitude: 1e-06 BendingRadius: 0 Height: 500 Width: 500 EndField: Tanh scaleFactor: -1.293 position: (0,0,-9799.45) rotationVector: (0,0,1) angle: 0 name: Field28
682 
Multipole Order: 4 Length: 2000 Magnitude: 1e-06 BendingRadius: 0 Height: 500 Width: 500 EndField: Tanh scaleFactor: 1.293 position: (0,0,-8639.45) rotationVector: (0,0,1) angle: 0 name: Field29
683 
RFFieldMap Length: 430 PeakField: 0.009 Delay: 20.4494 Frequency: 0.20125 scaleFactor: 1 position: (0,0,-1140.75) rotationVector: (0,0,1) angle: 0 name: Field19
684 
RFFieldMap Length: 430 PeakField: 0.009 Delay: 18.6388 Frequency: 0.20125 scaleFactor: 1 position: (0,0,-1609.25) rotationVector: (0,0,1) angle: 0 name: Field20
685 
RFFieldMap Length: 430 PeakField: 0.009 Delay: 22.2516 Frequency: 0.20125 scaleFactor: 1 position: (0,0,-672.25) rotationVector: (0,0,1) angle: 0 name: Field21
686 
RFFieldMap Length: 430 PeakField: 0.009 Delay: 16.8196 Frequency: 0.20125 scaleFactor: 1 position: (0,0,-2077.75) rotationVector: (0,0,1) angle: 0 name: Field22
687 
RFFieldMap Length: 430 PeakField: 0.009 Delay: 30.9696 Frequency: 0.20125 scaleFactor: 1 position: (0,0,1609.25) rotationVector: (0,0,1) angle: 0 name: Field23
688 
RFFieldMap Length: 430 PeakField: 0.009 Delay: 29.1894 Frequency: 0.20125 scaleFactor: 1 position: (0,0,1140.75) rotationVector: (0,0,1) angle: 0 name: Field24
689 
RFFieldMap Length: 430 PeakField: 0.009 Delay: 32.7431 Frequency: 0.20125 scaleFactor: 1 position: (0,0,2077.75) rotationVector: (0,0,1) angle: 0 name: Field25
690 
RFFieldMap Length: 430 PeakField: 0.009 Delay: 27.4019 Frequency: 0.20125 scaleFactor: 1 position: (0,0,672.25) rotationVector: (0,0,1) angle: 0 name: Field26
691 
Written 1 event(s) to file.
692 
Written 1 event(s) to file.
693 
Written 3 event(s) to file.
694 
Written 1 event(s) to file.
695 
Written 1 event(s) to file.
696 
Welcome to MAUS:
697 
	Process ID (PID): 13019
698 
	Program Arguments: ['/home/mice/MAUS/.maus_release/bin/simulate_mice.py', '--configuration_file', '/home/mice/MAUS/.maus_release/tests/integration/test_utilities/test_root_io/root_io_mc_config.py', '--output_root_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_simulate_mice.root']
699 
	Version: MAUS release version 0.7.3
700 
Initialising Globals
701 
Initiating Execution
702 
OUTPUT: Setting up outputer
703 
Writing JobHeader...
704 
INPUT: Setting up input
705 
PIPELINE: Get event, TRANSFORM, MERGE, OUTPUT, repeat
706 
HINT: MAUS will process 1 event only at first...
707 
MERGE: Setting up merger
708 
TRANSFORM: Setting up transformer
709 
TRANSFORM/MERGE/OUTPUT:  Processed 1 events so far, 1 events in buffer.
710 
TRANSFORM/MERGE/OUTPUT:  Processed 2 events so far, 0 events in buffer.
711 
  Missing an end_of_run spill...
712 
  ...creating one to flush the mergers!
713 
TRANSFORM: Shutting down transformer
714 
MERGE: Shutting down merger
715 
INPUT: Shutting down inputer
716 
OUTPUT: Shutting down outputer
717 
Clearing Globals
718 
DONE
719 
Error in <TGClient::TGClient>: can't open display "heplnv150.pp.rl.ac.uk:0.0", switching to batch mode...
720 
 In case you run from a remote ssh session, reconnect with ssh -Y
721 
Placing Box of type Box position: (0,0,0) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 0.001 m^3,  material: lH2 mass (excl daughters): 0.0708 kg
722 
Setting the phase
723 
Made 0 attempts to phase 0 cavities with 0 remaining
724 
Failed to find event 1 in file.
725 
Failed to find event 1 in file.
726 
Failed to find event 3 in file.
727 
Failed to find event 1 in file.
728 
Failed to find event 1 in file.
729 
Welcome to MAUS:
730 
	Process ID (PID): 14938
731 
	Program Arguments: ['/home/mice/MAUS/.maus_release/bin/utilities/root_to_json.py', '--input_root_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_simulate_mice.root', '--output_json_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_simulate_mice_IN.json', '--verbose_level', '1', '--header_and_footer_mode', 'dont_append']
732 
	Version: MAUS release version 0.7.3
733 
Initialising Globals
734 
Initiating Execution
735 
OUTPUT: Setting up outputer
736 
Writing JobHeader...
737 
INPUT: Setting up input
738 
PIPELINE: Get event, TRANSFORM, MERGE, OUTPUT, repeat
739 
HINT: MAUS will process 1 event only at first...
740 
TRANSFORM/MERGE/OUTPUT:  Processed 1 events so far, 1 events in buffer.
741 
TRANSFORM/MERGE/OUTPUT:  Processed 2 events so far, 1 events in buffer.
742 
MERGE: Setting up merger
743 
TRANSFORM: Setting up transformer
744 
TRANSFORM/MERGE/OUTPUT:  Processed 3 events so far, 1 events in buffer.
745 
TRANSFORM/MERGE/OUTPUT:  Processed 4 events so far, 1 events in buffer.
746 
TRANSFORM/MERGE/OUTPUT:  Processed 5 events so far, 1 events in buffer.
747 
TRANSFORM/MERGE/OUTPUT:  Processed 6 events so far, 1 events in buffer.
748 
TRANSFORM/MERGE/OUTPUT:  Processed 7 events so far, 0 events in buffer.
749 
TRANSFORM: Shutting down transformer
750 
MERGE: Shutting down merger
751 
INPUT: Shutting down inputer
752 
OUTPUT: Shutting down outputer
753 
Clearing Globals
754 
DONE
755 
Error in <TGClient::TGClient>: can't open display "heplnv150.pp.rl.ac.uk:0.0", switching to batch mode...
756 
 In case you run from a remote ssh session, reconnect with ssh -Y
757 
Placing Box of type Box position: (0,0,0) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 0.001 m^3,  material: lH2 mass (excl daughters): 0.0708 kg
758 
Setting the phase
759 
Made 0 attempts to phase 0 cavities with 0 remaining
760 
Written 1 event(s) to file.
761 
Written 1 event(s) to file.
762 
Written 3 event(s) to file.
763 
Written 1 event(s) to file.
764 
Written 1 event(s) to file.
765 
Welcome to MAUS:
766 
	Process ID (PID): 15758
767 
	Program Arguments: ['/home/mice/MAUS/.maus_release/bin/utilities/json_to_root.py', '--input_json_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_simulate_mice_IN.json', '--output_root_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_simulate_mice.root', '--verbose_level', '1', '--header_and_footer_mode', 'dont_append']
768 
	Version: MAUS release version 0.7.3
769 
Initialising Globals
770 
Initiating Execution
771 
OUTPUT: Setting up outputer
772 
Writing JobHeader...
773 
INPUT: Setting up input
774 
PIPELINE: Get event, TRANSFORM, MERGE, OUTPUT, repeat
775 
HINT: MAUS will process 1 event only at first...
776 
TRANSFORM/MERGE/OUTPUT:  Processed 1 events so far, 1 events in buffer.
777 
TRANSFORM/MERGE/OUTPUT:  Processed 2 events so far, 1 events in buffer.
778 
MERGE: Setting up merger
779 
TRANSFORM: Setting up transformer
780 
TRANSFORM/MERGE/OUTPUT:  Processed 3 events so far, 1 events in buffer.
781 
TRANSFORM/MERGE/OUTPUT:  Processed 4 events so far, 1 events in buffer.
782 
TRANSFORM/MERGE/OUTPUT:  Processed 5 events so far, 1 events in buffer.
783 
TRANSFORM/MERGE/OUTPUT:  Processed 6 events so far, 1 events in buffer.
784 
TRANSFORM/MERGE/OUTPUT:  Processed 7 events so far, 0 events in buffer.
785 
TRANSFORM: Shutting down transformer
786 
MERGE: Shutting down merger
787 
INPUT: Shutting down inputer
788 
OUTPUT: Shutting down outputer
789 
Clearing Globals
790 
DONE
791 
Error in <TGClient::TGClient>: can't open display "heplnv150.pp.rl.ac.uk:0.0", switching to batch mode...
792 
 In case you run from a remote ssh session, reconnect with ssh -Y
793 
Placing Box of type Box position: (0,0,0) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 0.001 m^3,  material: lH2 mass (excl daughters): 0.0708 kg
794 
Setting the phase
795 
Made 0 attempts to phase 0 cavities with 0 remaining
796 
Failed to find event 1 in file.
797 
Failed to find event 1 in file.
798 
Failed to find event 3 in file.
799 
Failed to find event 1 in file.
800 
Failed to find event 1 in file.
801 
Welcome to MAUS:
802 
	Process ID (PID): 16576
803 
	Program Arguments: ['/home/mice/MAUS/.maus_release/bin/utilities/root_to_json.py', '--input_root_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_simulate_mice.root', '--output_json_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_simulate_mice_OUT.json', '--verbose_level', '1', '--header_and_footer_mode', 'dont_append']
804 
	Version: MAUS release version 0.7.3
805 
Initialising Globals
806 
Initiating Execution
807 
OUTPUT: Setting up outputer
808 
Writing JobHeader...
809 
INPUT: Setting up input
810 
PIPELINE: Get event, TRANSFORM, MERGE, OUTPUT, repeat
811 
HINT: MAUS will process 1 event only at first...
812 
TRANSFORM/MERGE/OUTPUT:  Processed 1 events so far, 1 events in buffer.
813 
TRANSFORM/MERGE/OUTPUT:  Processed 2 events so far, 1 events in buffer.
814 
MERGE: Setting up merger
815 
TRANSFORM: Setting up transformer
816 
TRANSFORM/MERGE/OUTPUT:  Processed 3 events so far, 1 events in buffer.
817 
TRANSFORM/MERGE/OUTPUT:  Processed 4 events so far, 1 events in buffer.
818 
TRANSFORM/MERGE/OUTPUT:  Processed 5 events so far, 1 events in buffer.
819 
TRANSFORM/MERGE/OUTPUT:  Processed 6 events so far, 1 events in buffer.
820 
TRANSFORM/MERGE/OUTPUT:  Processed 7 events so far, 0 events in buffer.
821 
TRANSFORM: Shutting down transformer
822 
MERGE: Shutting down merger
823 
INPUT: Shutting down inputer
824 
OUTPUT: Shutting down outputer
825 
Clearing Globals
826 
DONE
827 
ok
828 

    		
  

  

    
      829
    
    
      
======================================================================


    		
  

  

    
      830
    
    
      
FAIL: Checks that no other program is grabbing the MAUS help function


    		
  

  

    
      831
    
    
      
----------------------------------------------------------------------


    		
  

  

    
      832
    
    
      
Traceback (most recent call last):


    		
  

  

    
      833
    
    
      
  File "/home/mice/MAUS/.maus_release/tests/integration/test_simulation/test_help/test_help.py", line 23, in test_maus_help


    		
  

  

    
      834
    
    
      
    msg='Found\n'+first_line+'\nexpected\n'+assumed_output)


    		
  

  

    
      835
    
    
      
AssertionError: Found


    		
  

  

    
      836
    
    
      
Error in <TGClient::TGClient>: can't open display "heplnv150.pp.rl.ac.uk:0.0", switching to batch mode...


    		
  

  

    
      837
    
    
      

    		
  

  

    
      838
    
    
      
expected


    		
  

  

    
      839
    
    
      
usage: simulate_mice.py [-h]


    		
  

  

    
      840
    
    
      

    		
  

  

    
      841
    
    
      
----------------------------------------------------------------------


    		
  

  

    
      842
    
    
      
Ran 44 tests in 17879.760s


    		
  

  

    
      843
    
    
      

    		
  

  

    
      844
    
    
      
FAILED (SKIP=12, failures=1)


    		
  

  

    
      845
    
    
      
 Kolmo Prob  h1 = tof01_ref, sum bin content =177  effective entries =177


    		
  

  

    
      846
    
    
      
 Kolmo Prob  h2 = tof01, sum bin content =218  effective entries =218


    		
  

  

    
      847
    
    
      
 Kolmo Prob     = 0.990583, Max Dist = 0.0443943


    		
  












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