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Bug #1406 » onrec01-application_tests.log

Rogers, Chris, 04 February 2014 12:29

 
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Error in <TGClient::TGClient>: can't open display "isis5817.sci.rl.ac.uk:0.0", switching to batch mode...
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 In case you run from a remote ssh session, reconnect with ssh -Y
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Check that analyze_data_online makes good histos for full run ... SKIP: Skip - online is not available
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Check that the default parameters produce sensible output ... Error in <TGClient::TGClient>: can't open display "isis5817.sci.rl.ac.uk:0.0", switching to batch mode...
5
 In case you run from a remote ssh session, reconnect with ssh -Y
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Placing Box of type Box position: (0,0,0) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 0.001 m^3,  material: lH2 mass (excl daughters): 0.0708 kg
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Setting the phase 
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Made 0 attempts to phase 0 cavities with 0 remaining
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WARNING : The first event is not a START_OF_RUN. Spill count and Event count not accurate. 
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Written 1 event(s) to file.
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Written 1 event(s) to file.
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>Server:  MICE Production Server - Public read only interface 1.0.0.0
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Welcome to MAUS:
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	Process ID (PID): 15554
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	Program Arguments: ['/home/mice/MAUS/.maus_release/bin/analyze_data_offline.py', '-output_root_file_name', '/home/mice/MAUS/.maus_release/tmp/test_analyze_data_offline.root']
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	Version: MAUS release version 0.7.3
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Initialising Globals
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Initiating Execution
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OUTPUT: Setting up outputer
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Writing JobHeader...
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INPUT: Setting up input
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PIPELINE: Get event, TRANSFORM, MERGE, OUTPUT, repeat
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HINT: MAUS will process 1 event only at first...
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MERGE: Setting up merger
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TRANSFORM: Setting up transformer
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TRANSFORM/MERGE/OUTPUT:  Processed 1 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 2 events so far, 1 events in buffer.
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Traceback (most recent call last):
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  File "/home/mice/MAUS/.maus_release/src/common_py/ErrorHandler.py", line 162, in HandleCppException
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    raise CppError(error_message)
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ErrorHandler.CppError: In branch daq_data
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In branch unknown
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Failed to recognise all json properties V1731  at ObjectProcessor<ObjectType>::JsonToCpp
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TRANSFORM/MERGE/OUTPUT:  Processed 3 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 4 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 5 events so far, 1 events in buffer.
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Traceback (most recent call last):
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  File "/home/mice/MAUS/.maus_release/src/common_py/ErrorHandler.py", line 162, in HandleCppException
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    raise CppError(error_message)
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ErrorHandler.CppError: In branch daq_data
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In branch unknown
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Failed to recognise all json properties V1731  at ObjectProcessor<ObjectType>::JsonToCpp
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TRANSFORM/MERGE/OUTPUT:  Processed 6 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 7 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 8 events so far, 1 events in buffer.
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Traceback (most recent call last):
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  File "/home/mice/MAUS/.maus_release/src/common_py/ErrorHandler.py", line 162, in HandleCppException
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    raise CppError(error_message)
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ErrorHandler.CppError: In branch daq_data
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In branch unknown
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Failed to recognise all json properties V1731  at ObjectProcessor<ObjectType>::JsonToCpp
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TRANSFORM/MERGE/OUTPUT:  Processed 9 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 10 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 11 events so far, 1 events in buffer.
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Traceback (most recent call last):
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  File "/home/mice/MAUS/.maus_release/src/common_py/ErrorHandler.py", line 162, in HandleCppException
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    raise CppError(error_message)
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ErrorHandler.CppError: In branch daq_data
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In branch unknown
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Failed to recognise all json properties V1731  at ObjectProcessor<ObjectType>::JsonToCpp
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TRANSFORM/MERGE/OUTPUT:  Processed 12 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 13 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 14 events so far, 1 events in buffer.
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Traceback (most recent call last):
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  File "/home/mice/MAUS/.maus_release/src/common_py/ErrorHandler.py", line 162, in HandleCppException
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    raise CppError(error_message)
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ErrorHandler.CppError: In branch daq_data
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In branch unknown
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Failed to recognise all json properties V1731  at ObjectProcessor<ObjectType>::JsonToCpp
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TRANSFORM/MERGE/OUTPUT:  Processed 15 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 16 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 17 events so far, 1 events in buffer.
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Traceback (most recent call last):
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  File "/home/mice/MAUS/.maus_release/src/common_py/ErrorHandler.py", line 162, in HandleCppException
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    raise CppError(error_message)
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ErrorHandler.CppError: In branch daq_data
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In branch unknown
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Failed to recognise all json properties V1731  at ObjectProcessor<ObjectType>::JsonToCpp
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TRANSFORM/MERGE/OUTPUT:  Processed 18 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 19 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 20 events so far, 1 events in buffer.
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Traceback (most recent call last):
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  File "/home/mice/MAUS/.maus_release/src/common_py/ErrorHandler.py", line 162, in HandleCppException
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    raise CppError(error_message)
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ErrorHandler.CppError: In branch daq_data
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In branch unknown
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Failed to recognise all json properties V1731  at ObjectProcessor<ObjectType>::JsonToCpp
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Written 19 event(s) to file.
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Written 1 event(s) to file.
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Written 1 event(s) to file.
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TRANSFORM/MERGE/OUTPUT:  Processed 21 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 22 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 23 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 24 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 25 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 26 events so far, 0 events in buffer.
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TRANSFORM: Shutting down transformer
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MERGE: Shutting down merger
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INPUT: Shutting down inputer
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OUTPUT: Shutting down outputer
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Clearing Globals
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DONE
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Error in <TGClient::TGClient>: can't open display "isis5817.sci.rl.ac.uk:0.0", switching to batch mode...
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 In case you run from a remote ssh session, reconnect with ssh -Y
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Placing Box of type Box position: (0,0,0) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 0.001 m^3,  material: lH2 mass (excl daughters): 0.0708 kg
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Setting the phase 
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Made 0 attempts to phase 0 cavities with 0 remaining
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Failed to find event 1 in file.
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Failed to find event 1 in file.
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Failed to find event 19 in file.
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Failed to find event 1 in file.
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Failed to find event 1 in file.
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Welcome to MAUS:
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	Process ID (PID): 15848
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	Program Arguments: ['/home/mice/MAUS/.maus_release/bin/utilities/root_to_json.py', '-input_root_file_name', '/home/mice/MAUS/.maus_release/tmp/test_analyze_data_offline.root', '-output_json_file_name', '/home/mice/MAUS/.maus_release/tmp/test_analyze_data_offline.json']
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	Version: MAUS release version 0.7.3
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Initialising Globals
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Initiating Execution
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OUTPUT: Setting up outputer
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Writing JobHeader...
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INPUT: Setting up input
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PIPELINE: Get event, TRANSFORM, MERGE, OUTPUT, repeat
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HINT: MAUS will process 1 event only at first...
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TRANSFORM/MERGE/OUTPUT:  Processed 1 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 2 events so far, 1 events in buffer.
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MERGE: Setting up merger
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TRANSFORM: Setting up transformer
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TRANSFORM/MERGE/OUTPUT:  Processed 3 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 4 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 5 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 6 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 7 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 8 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 9 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 10 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 11 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 12 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 13 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 14 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 15 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 16 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 17 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 18 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 19 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 20 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 21 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 22 events so far, 1 events in buffer.
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TRANSFORM/MERGE/OUTPUT:  Processed 23 events so far, 0 events in buffer.
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TRANSFORM: Shutting down transformer
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MERGE: Shutting down merger
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INPUT: Shutting down inputer
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OUTPUT: Shutting down outputer
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Clearing Globals
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DONE
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ok
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[2014-02-04 10:02:53,603: WARNING/MainProcess] Traceback (most recent call last):
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[2014-02-04 10:02:53,603: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/bin/celeryd", line 8, in <module>
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[2014-02-04 10:02:53,604: WARNING/MainProcess] load_entry_point('celery==2.5.5', 'console_scripts', 'celeryd')()
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[2014-02-04 10:02:53,604: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/celery-2.5.5-py2.7.egg/celery/bin/celeryd.py", line 201, in main
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[2014-02-04 10:02:53,604: WARNING/MainProcess] worker.execute_from_commandline()
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[2014-02-04 10:02:53,604: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/celery-2.5.5-py2.7.egg/celery/bin/base.py", line 87, in execute_from_commandline
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[2014-02-04 10:02:53,604: WARNING/MainProcess] return self.handle_argv(prog_name, argv[1:])
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[2014-02-04 10:02:53,604: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/celery-2.5.5-py2.7.egg/celery/bin/base.py", line 125, in handle_argv
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[2014-02-04 10:02:53,605: WARNING/MainProcess] return self.run(*args, **options)
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[2014-02-04 10:02:53,605: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/celery-2.5.5-py2.7.egg/celery/bin/celeryd.py", line 101, in run
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[2014-02-04 10:02:53,605: WARNING/MainProcess] return self.app.Worker(**kwargs).run()
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[2014-02-04 10:02:53,605: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/celery-2.5.5-py2.7.egg/celery/apps/worker.py", line 137, in run
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[2014-02-04 10:02:53,605: WARNING/MainProcess] self.purge_messages()
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[2014-02-04 10:02:53,605: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/celery-2.5.5-py2.7.egg/celery/apps/worker.py", line 173, in purge_messages
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[2014-02-04 10:02:53,605: WARNING/MainProcess] count = self.app.control.discard_all()
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[2014-02-04 10:02:53,606: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/celery-2.5.5-py2.7.egg/celery/task/control.py", line 115, in discard_all
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[2014-02-04 10:02:53,606: WARNING/MainProcess] return self.app.amqp.get_task_consumer(connection=conn)\
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[2014-02-04 10:02:53,606: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/celery-2.5.5-py2.7.egg/celery/app/amqp.py", line 335, in get_task_consumer
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[2014-02-04 10:02:53,606: WARNING/MainProcess] **kwargs)
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[2014-02-04 10:02:53,606: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/kombu-2.1.8-py2.7.egg/kombu/compat.py", line 183, in __init__
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[2014-02-04 10:02:53,606: WARNING/MainProcess] self.backend = connection.channel()
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[2014-02-04 10:02:53,607: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/kombu-2.1.8-py2.7.egg/kombu/connection.py", line 151, in channel
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[2014-02-04 10:02:53,607: WARNING/MainProcess] chan = self.transport.create_channel(self.connection)
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[2014-02-04 10:02:53,607: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/kombu-2.1.8-py2.7.egg/kombu/connection.py", line 574, in connection
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[2014-02-04 10:02:53,607: WARNING/MainProcess] self._connection = self._establish_connection()
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[2014-02-04 10:02:53,607: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/kombu-2.1.8-py2.7.egg/kombu/connection.py", line 533, in _establish_connection
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[2014-02-04 10:02:53,608: WARNING/MainProcess] conn = self.transport.establish_connection()
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[2014-02-04 10:02:53,608: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/kombu-2.1.8-py2.7.egg/kombu/transport/amqplib.py", line 279, in establish_connection
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[2014-02-04 10:02:53,608: WARNING/MainProcess] connect_timeout=conninfo.connect_timeout)
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[2014-02-04 10:02:53,608: WARNING/MainProcess] File "/home/mice/MAUS/.maus_release/third_party/install/lib/python2.7/site-packages/kombu-2.1.8-py2.7.egg/kombu/transport/amqplib.py", line 89, in __init__
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[2014-02-04 10:02:53,608: WARNING/MainProcess] super(Connection, self).__init__(*args, **kwargs)
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[2014-02-04 10:02:53,608: WARNING/MainProcess] File "build/bdist.linux-x86_64/egg/amqplib/client_0_8/connection.py", line 129, in __init__
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[2014-02-04 10:02:53,609: WARNING/MainProcess] File "build/bdist.linux-x86_64/egg/amqplib/client_0_8/transport.py", line 281, in create_transport
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[2014-02-04 10:02:53,609: WARNING/MainProcess] File "build/bdist.linux-x86_64/egg/amqplib/client_0_8/transport.py", line 85, in __init__
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[2014-02-04 10:02:53,609: WARNING/MainProcess] socket
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[2014-02-04 10:02:53,609: WARNING/MainProcess] .
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[2014-02-04 10:02:53,609: WARNING/MainProcess] error
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[2014-02-04 10:02:53,610: WARNING/MainProcess] :
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[2014-02-04 10:02:53,610: WARNING/MainProcess] [Errno 111] Connection refused
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[2014-02-04 10:02:53,610: INFO/MainProcess] process shutting down
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Test birth broadcast command. ... SKIP: Skip - RabbitMQ seems to be down
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Test birth broadcast command with an invalid JSON ... SKIP: Skip - RabbitMQ seems to be down
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Test birth broadcast command with an invalid transform name. ... SKIP: Skip - RabbitMQ seems to be down
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Test birth broadcast command with a mismatched MAUS version. ... SKIP: Skip - RabbitMQ seems to be down
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Test birth broadcast command where the transform returns ... SKIP: Skip - RabbitMQ seems to be down
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Test death broadcast command. ... SKIP: Skip - RabbitMQ seems to be down
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Test death broadcast command where the transform returns ... SKIP: Skip - RabbitMQ seems to be down
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Test death broadcast command where the transform throws ... SKIP: Skip - RabbitMQ seems to be down
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Test process command. ... SKIP: Skip - RabbitMQ seems to be down
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Test process command fails after death has been called. ... SKIP: Skip - RabbitMQ seems to be down
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Test process timeout. ... SKIP: Skip - RabbitMQ seems to be down
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Get everything in bin/examples and check it runs with returncode 0 ... Traceback (most recent call last):
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  File "/home/mice/MAUS/.maus_release/tests/integration/test_examples/test_examples.py", line 46, in move_images
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    os.mkdir(plot_dir)
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OSError: [Errno 17] File exists: '/home/mice/MAUS/.maus_release/tests/integration/plots/examples'
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Traceback (most recent call last):
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  File "/home/mice/MAUS/.maus_release/tests/integration/test_examples/test_examples.py", line 52, in move_images
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    os.mkdir(plot_dir)
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OSError: [Errno 17] File exists: '/home/mice/MAUS/.maus_release/tests/integration/plots/examples/load_json_file'
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Traceback (most recent call last):
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  File "/home/mice/MAUS/.maus_release/tests/integration/test_examples/test_examples.py", line 46, in move_images
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    os.mkdir(plot_dir)
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OSError: [Errno 17] File exists: '/home/mice/MAUS/.maus_release/tests/integration/plots/examples'
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Traceback (most recent call last):
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  File "/home/mice/MAUS/.maus_release/tests/integration/test_examples/test_examples.py", line 52, in move_images
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    os.mkdir(plot_dir)
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OSError: [Errno 17] File exists: '/home/mice/MAUS/.maus_release/tests/integration/plots/examples/configuration_db_example'
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Traceback (most recent call last):
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  File "/home/mice/MAUS/.maus_release/tests/integration/test_examples/test_examples.py", line 46, in move_images
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    os.mkdir(plot_dir)
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OSError: [Errno 17] File exists: '/home/mice/MAUS/.maus_release/tests/integration/plots/examples'
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Traceback (most recent call last):
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  File "/home/mice/MAUS/.maus_release/tests/integration/test_examples/test_examples.py", line 52, in move_images
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    os.mkdir(plot_dir)
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OSError: [Errno 17] File exists: '/home/mice/MAUS/.maus_release/tests/integration/plots/examples/load_root_file'
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Traceback (most recent call last):
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  File "/home/mice/MAUS/.maus_release/tests/integration/test_examples/test_examples.py", line 46, in move_images
233
    os.mkdir(plot_dir)
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OSError: [Errno 17] File exists: '/home/mice/MAUS/.maus_release/tests/integration/plots/examples'
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Traceback (most recent call last):
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  File "/home/mice/MAUS/.maus_release/tests/integration/test_examples/test_examples.py", line 52, in move_images
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    os.mkdir(plot_dir)
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OSError: [Errno 17] File exists: '/home/mice/MAUS/.maus_release/tests/integration/plots/examples/simple_scalers_example'
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Traceback (most recent call last):
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  File "/home/mice/MAUS/.maus_release/tests/integration/test_examples/test_examples.py", line 46, in move_images
241
    os.mkdir(plot_dir)
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OSError: [Errno 17] File exists: '/home/mice/MAUS/.maus_release/tests/integration/plots/examples'
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Traceback (most recent call last):
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  File "/home/mice/MAUS/.maus_release/tests/integration/test_examples/test_examples.py", line 52, in move_images
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    os.mkdir(plot_dir)
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OSError: [Errno 17] File exists: '/home/mice/MAUS/.maus_release/tests/integration/plots/examples/make_field_map'
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rm load_root_file;
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rm *.png;
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Running with /home/mice/MAUS/.maus_release on 
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Linux miceonrec01.micenet.rl.ac.uk 2.6.18-308.4.1.el5 #1 SMP Tue Apr 17 14:33:50 EDT 2012 x86_64 x86_64 x86_64 GNU/Linux
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g++ load_root_file.cc -o load_root_file \
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	                      -I/home/mice/MAUS/.maus_release/ \
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	                      -I/home/mice/MAUS/.maus_release/src/common_cpp \
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	                      -I/home/mice/MAUS/.maus_release/src/legacy \
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	                      -I/home/mice/MAUS/.maus_release/third_party/install/include \
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	                      -I/home/mice/MAUS/.maus_release/third_party/build/root_v5.34.07/include \
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	                      -L/home/mice/MAUS/.maus_release/build/ \
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	                      `root-config --ldflags` \
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	                      `/home/mice/MAUS/.maus_release/third_party/build/root_v5.34.07/bin/root-config --glibs` \
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	                      -lMausCpp \
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	                       -Wl,--no-as-needed
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ok
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Check that we can calculate optics beta function correctly; plot output ... Setting the phase 
264
Made 0 attempts to phase 0 cavities with 0 remaining
265
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,-5250) rotationVector: (0,0,1) angle: 0 name: Field1
266
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,-4500) rotationVector: (0,0,1) angle: 0 name: Field2
267
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,-3750) rotationVector: (0,0,1) angle: 0 name: Field3
268
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,-3000) rotationVector: (0,0,1) angle: 0 name: Field4
269
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,-2250) rotationVector: (0,0,1) angle: 0 name: Field5
270
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,-1500) rotationVector: (0,0,1) angle: 0 name: Field6
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Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,-750) rotationVector: (0,0,1) angle: 0 name: Field7
272
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,0) rotationVector: (0,0,1) angle: 0 name: Field8
273
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,750) rotationVector: (0,0,1) angle: 0 name: Field9
274
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,1500) rotationVector: (0,0,1) angle: 0 name: Field10
275
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,2250) rotationVector: (0,0,1) angle: 0 name: Field11
276
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,3000) rotationVector: (0,0,1) angle: 0 name: Field12
277
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,3750) rotationVector: (0,0,1) angle: 0 name: Field13
278
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,4500) rotationVector: (0,0,1) angle: 0 name: Field14
279
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,5250) rotationVector: (0,0,1) angle: 0 name: Field15
280
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,6000) rotationVector: (0,0,1) angle: 0 name: Field16
281
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,6750) rotationVector: (0,0,1) angle: 0 name: Field17
282
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,7500) rotationVector: (0,0,1) angle: 0 name: Field18
283
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,8250) rotationVector: (0,0,1) angle: 0 name: Field19
284
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,9000) rotationVector: (0,0,1) angle: 0 name: Field20
285
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,9750) rotationVector: (0,0,1) angle: 0 name: Field21
286
Looking for optimisation requests
287
Running beam envelope through
288
Finding TrackingDerivative envelope functions
289
Setting the phase 
290
Made 0 attempts to phase 0 cavities with 0 remaining
291
done
292
Info in <TCanvas::Print>: png file /home/mice/MAUS/.maus_release/tests/integration/plots/optics/mapping_optics.png has been created
293
Setting the phase 
294
Made 0 attempts to phase 0 cavities with 0 remaining
295
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,-5250) rotationVector: (0,0,1) angle: 0 name: Field1
296
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,-4500) rotationVector: (0,0,1) angle: 0 name: Field2
297
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,-3750) rotationVector: (0,0,1) angle: 0 name: Field3
298
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,-3000) rotationVector: (0,0,1) angle: 0 name: Field4
299
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,-2250) rotationVector: (0,0,1) angle: 0 name: Field5
300
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,-1500) rotationVector: (0,0,1) angle: 0 name: Field6
301
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,-750) rotationVector: (0,0,1) angle: 0 name: Field7
302
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,0) rotationVector: (0,0,1) angle: 0 name: Field8
303
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,750) rotationVector: (0,0,1) angle: 0 name: Field9
304
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,1500) rotationVector: (0,0,1) angle: 0 name: Field10
305
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,2250) rotationVector: (0,0,1) angle: 0 name: Field11
306
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,3000) rotationVector: (0,0,1) angle: 0 name: Field12
307
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,3750) rotationVector: (0,0,1) angle: 0 name: Field13
308
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,4500) rotationVector: (0,0,1) angle: 0 name: Field14
309
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,5250) rotationVector: (0,0,1) angle: 0 name: Field15
310
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,6000) rotationVector: (0,0,1) angle: 0 name: Field16
311
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,6750) rotationVector: (0,0,1) angle: 0 name: Field17
312
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,7500) rotationVector: (0,0,1) angle: 0 name: Field18
313
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,8250) rotationVector: (0,0,1) angle: 0 name: Field19
314
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: -106.66 position: (0,0,9000) rotationVector: (0,0,1) angle: 0 name: Field20
315
Solenoid Length: 150 Inner Radius: 350 Thickness: 150 Current Density: 1  scaleFactor: 106.66 position: (0,0,9750) rotationVector: (0,0,1) angle: 0 name: Field21
316
Looking for optimisation requests
317
Setting the phase 
318
Made 0 attempts to phase 0 cavities with 0 remaining
319
@Beta_T: 750  ** Score1: 28272.9 Score2: 100.169  ** Total: 28373
320
@Beta_T: 759.978  ** Score1: 33951.3 Score2: 120.214  ** Total: 34071.5
321
@Beta_T: 745.997  ** Score1: 26123.7 Score2: 92.5806  ** Total: 26216.3
322
@Beta_T: 733.946  ** Score1: 20114.8 Score2: 71.3575  ** Total: 20186.1
323
@Beta_T: 697.482  ** Score1: 6413.16 Score2: 22.8962  ** Total: 6436.06
324
@Beta_T: 586.504  ** Score1: 16716.5 Score2: 58.2668  ** Total: 16774.8
325
@Beta_T: 644.214  ** Score1: 250.37 Score2: 0.816117  ** Total: 251.186
326
@Beta_T: 590.627  ** Score1: 14591.8 Score2: 50.8281  ** Total: 14642.6
327
@Beta_T: 590.627  ** Score1: 14591.8 Score2: 50.8281  ** Total: 14642.6
328
@Beta_T: 670.915  ** Score1: 1100.68 Score2: 4.0115  ** Total: 1104.69
329
@Beta_T: 617.433  ** Score1: 4499.98 Score2: 15.5519  ** Total: 4515.53
330
@Beta_T: 657.578  ** Score1: 80.0686 Score2: 0.320164  ** Total: 80.3887
331
@Beta_T: 670.915  ** Score1: 1100.68 Score2: 4.0115  ** Total: 1104.69
332
@Beta_T: 650.898  ** Score1: 11.3457 Score2: 0.0271198  ** Total: 11.3728
333
@Beta_T: 644.214  ** Score1: 250.37 Score2: 0.816117  ** Total: 251.186
334
@Beta_T: 654.239  ** Score1: 7.87927 Score2: 0.0406385  ** Total: 7.91991
335
@Beta_T: 657.578  ** Score1: 80.0686 Score2: 0.320164  ** Total: 80.3887
336
@Beta_T: 652.569  ** Score1: 0.0763787 Score2: 0.000350043  ** Total: 0.0767287
337
@Beta_T: 650.898  ** Score1: 11.3457 Score2: 0.0271198  ** Total: 11.3728
338
@Beta_T: 653.404  ** Score1: 1.60375 Score2: 0.012147  ** Total: 1.61589
339
@Beta_T: 651.734  ** Score1: 3.31704 Score2: 0.00531759  ** Total: 3.32236
340
@Beta_T: 652.986  ** Score1: 0.245303 Score2: 0.00415732  ** Total: 0.24946
341
@Beta_T: 652.151  ** Score1: 1.09946 Score2: 0.000733881  ** Total: 1.10019
342
@Beta_T: 652.778  ** Score1: 0.0119955 Score2: 0.00173034  ** Total: 0.0137258
343
@Beta_T: 652.986  ** Score1: 0.245303 Score2: 0.00415732  ** Total: 0.24946
344
@Beta_T: 652.673  ** Score1: 0.00695634 Score2: 0.000909286  ** Total: 0.00786563
345
@Beta_T: 652.569  ** Score1: 0.0763787 Score2: 0.000350043  ** Total: 0.0767287
346
@Beta_T: 652.725  ** Score1: 0.000170663 Score2: 0.00128709  ** Total: 0.00145776
347
@Beta_T: 652.778  ** Score1: 0.0119955 Score2: 0.00173034  ** Total: 0.0137258
348
@Beta_T: 652.699  ** Score1: 0.00123689 Score2: 0.00109001  ** Total: 0.0023269
349
@Beta_T: 652.751  ** Score1: 0.00375707 Score2: 0.00150054  ** Total: 0.0052576
350
@Beta_T: 652.712  ** Score1: 0.000122158 Score2: 0.00118651  ** Total: 0.00130867
351
@Beta_T: 652.712  ** Score1: 0.000122158 Score2: 0.00118651  ** Total: 0.00130867
352
Running beam envelope through
353
Finding TrackingDerivative envelope functions
354
Setting the phase 
355
Made 0 attempts to phase 0 cavities with 0 remaining
356
done
357
Info in <TCanvas::Print>: png file /home/mice/MAUS/.maus_release/tests/integration/plots/optics/optimiser_optics.png has been created
358
ok
359
Check that we have coloured particles ... ok
360
Check that we have accumulated particles ... ok
361
Check that we can generate a binomial distribution for event number ... Error in <TGClient::TGClient>: can't open display "isis5817.sci.rl.ac.uk:0.0", switching to batch mode...
362
 In case you run from a remote ssh session, reconnect with ssh -Y
363
Setting the phase 
364
Made 0 attempts to phase 0 cavities with 0 remaining
365
Written 1 event(s) to file.
366
Written 1 event(s) to file.
367
Written 101 event(s) to file.
368
Written 1 event(s) to file.
369
Written 1 event(s) to file.
370
Error in <TGClient::TGClient>: can't open display "isis5817.sci.rl.ac.uk:0.0", switching to batch mode...
371
 In case you run from a remote ssh session, reconnect with ssh -Y
372
Setting the phase 
373
Made 0 attempts to phase 0 cavities with 0 remaining
374
Failed to find event 1 in file.
375
Failed to find event 1 in file.
376
Failed to find event 101 in file.
377
Failed to find event 1 in file.
378
Failed to find event 1 in file.
379
Error in <TGClient::TGClient>: can't open display "isis5817.sci.rl.ac.uk:0.0", switching to batch mode...
380
 In case you run from a remote ssh session, reconnect with ssh -Y
381
Setting the phase 
382
Made 0 attempts to phase 0 cavities with 0 remaining
383
Written 1 event(s) to file.
384
Written 1 event(s) to file.
385
Written 1001 event(s) to file.
386
Written 1 event(s) to file.
387
Written 1 event(s) to file.
388
Error in <TGClient::TGClient>: can't open display "isis5817.sci.rl.ac.uk:0.0", switching to batch mode...
389
 In case you run from a remote ssh session, reconnect with ssh -Y
390
Setting the phase 
391
Made 0 attempts to phase 0 cavities with 0 remaining
392
Failed to find event 1 in file.
393
Failed to find event 1 in file.
394
Failed to find event 1001 in file.
395
Failed to find event 1 in file.
396
Failed to find event 1 in file.
397
Error in <TGClient::TGClient>: can't open display "isis5817.sci.rl.ac.uk:0.0", switching to batch mode...
398
 In case you run from a remote ssh session, reconnect with ssh -Y
399
Setting the phase 
400
Made 0 attempts to phase 0 cavities with 0 remaining
401
Written 1 event(s) to file.
402
Written 1 event(s) to file.
403
Written 2 event(s) to file.
404
Written 1 event(s) to file.
405
Written 1 event(s) to file.
406
Error in <TGClient::TGClient>: can't open display "isis5817.sci.rl.ac.uk:0.0", switching to batch mode...
407
 In case you run from a remote ssh session, reconnect with ssh -Y
408
Setting the phase 
409
Made 0 attempts to phase 0 cavities with 0 remaining
410
Failed to find event 1 in file.
411
Failed to find event 1 in file.
412
Failed to find event 2 in file.
413
Failed to find event 1 in file.
414
Failed to find event 1 in file.
415
Info in <TCanvas::Print>: png file /home/mice/MAUS/.maus_release/tests/integration/plots/beam_maker/binomial_distribution_test.png has been created
416
ok
417
Check that the default beam parameters run and produce some number of ... ok
418
Check that the weight of each sub-beam is close to the expected weight ... ok
419
Check that no nans appear ... Info in <TCanvas::Print>: png file /home/mice/MAUS/.maus_release/tests/integration/plots/beam_maker/nan_energy_distribution_test.png has been created
420
ok
421
Check that beam maker generates sawtooth t distribution correctly ... Info in <TCanvas::Print>: png file /home/mice/MAUS/.maus_release/tests/integration/plots/beam_maker/sawtooth_time_distribution_test.png has been created
422
ok
423
Check that beam maker generates uniform t distribution correctly ... Info in <TCanvas::Print>: png file /home/mice/MAUS/.maus_release/tests/integration/plots/beam_maker/uniform_time_distribution_test.png has been created
424
ok
425
Check that the weight of each sub-beam is close to the expected weight ... ok
426
For each "Configuration" file, check that we can load it - by calling ... ok
427
Checks that no other program is grabbing the MAUS help function ... FAIL
428
Check that we generate some useful error messages when running ... ok
429
Check that we can disable particle decay ... ok
430
Check physics_processes datacard works okay ... ok
431
Check that reference_physics_processes works okay ... ok
432
Check that we can set the stepping algorithm okay in Geant4 ... ok
433
Check that we can run the simulation, make plots ... ok
434
Run simulation and time execution time. ... ok
435
Test that the GRID batch script works ... FAIL
436
Check that get_beamline_info outputs the info by dates ... ok
437
Check that get_beamline_info outputs the info by dates ... ok
438
Check that get_beamline_info outputs the info by run ... ok
439
Check that get_geometry_ids creates a file with the correct geoms ... Server status is OK
440
File saved to /home/mice/MAUS/.maus_release/tmp/geometry_ids.txt
441
ok
442
Check that get_geometry_ids outputs the geometries ... Server status is OK
443
File saved to /home/mice/MAUS/.maus_release/tmp/geometry_ids.txt
444
ok
445
Check json browser --input-file, --output-file, --indent, -l ... ok
446
Check json browser -L ... ok
447
Check json browser --start-line, --end-line ... ok
448
Check that we can run the offline analysis, convert to root, convert ... Error in <TGClient::TGClient>: can't open display "isis5817.sci.rl.ac.uk:0.0", switching to batch mode...
449
 In case you run from a remote ssh session, reconnect with ssh -Y
450
Placing Box of type Box position: (0,0,0) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 0.001 m^3,  material: lH2 mass (excl daughters): 0.0708 kg
451
Setting the phase 
452
Made 0 attempts to phase 0 cavities with 0 remaining
453
WARNING : The first event is not a START_OF_RUN. Spill count and Event count not accurate. 
454
Written 1 event(s) to file.
455
Written 1 event(s) to file.
456
>Server:  MICE Production Server - Public read only interface 1.0.0.0
457
Welcome to MAUS:
458
	Process ID (PID): 31848
459
	Program Arguments: ['/home/mice/MAUS/.maus_release/bin/analyze_data_offline.py', '--output_root_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_offline_analysis.root', '--TOF_findTriggerPixelCut', '2.0']
460
	Version: MAUS release version 0.7.3
461
Initialising Globals
462
Initiating Execution
463
OUTPUT: Setting up outputer
464
Writing JobHeader...
465
INPUT: Setting up input
466
PIPELINE: Get event, TRANSFORM, MERGE, OUTPUT, repeat
467
HINT: MAUS will process 1 event only at first...
468
MERGE: Setting up merger
469
TRANSFORM: Setting up transformer
470
TRANSFORM/MERGE/OUTPUT:  Processed 1 events so far, 1 events in buffer.
471
TRANSFORM/MERGE/OUTPUT:  Processed 2 events so far, 1 events in buffer.
472
Traceback (most recent call last):
473
  File "/home/mice/MAUS/.maus_release/src/common_py/ErrorHandler.py", line 162, in HandleCppException
474
    raise CppError(error_message)
475
ErrorHandler.CppError: In branch daq_data
476
In branch unknown
477
Failed to recognise all json properties V1731  at ObjectProcessor<ObjectType>::JsonToCpp
478
TRANSFORM/MERGE/OUTPUT:  Processed 3 events so far, 1 events in buffer.
479
TRANSFORM/MERGE/OUTPUT:  Processed 4 events so far, 1 events in buffer.
480
TRANSFORM/MERGE/OUTPUT:  Processed 5 events so far, 1 events in buffer.
481
Traceback (most recent call last):
482
  File "/home/mice/MAUS/.maus_release/src/common_py/ErrorHandler.py", line 162, in HandleCppException
483
    raise CppError(error_message)
484
ErrorHandler.CppError: In branch daq_data
485
In branch unknown
486
Failed to recognise all json properties V1731  at ObjectProcessor<ObjectType>::JsonToCpp
487
TRANSFORM/MERGE/OUTPUT:  Processed 6 events so far, 1 events in buffer.
488
TRANSFORM/MERGE/OUTPUT:  Processed 7 events so far, 1 events in buffer.
489
TRANSFORM/MERGE/OUTPUT:  Processed 8 events so far, 1 events in buffer.
490
Traceback (most recent call last):
491
  File "/home/mice/MAUS/.maus_release/src/common_py/ErrorHandler.py", line 162, in HandleCppException
492
    raise CppError(error_message)
493
ErrorHandler.CppError: In branch daq_data
494
In branch unknown
495
Failed to recognise all json properties V1731  at ObjectProcessor<ObjectType>::JsonToCpp
496
TRANSFORM/MERGE/OUTPUT:  Processed 9 events so far, 1 events in buffer.
497
TRANSFORM/MERGE/OUTPUT:  Processed 10 events so far, 1 events in buffer.
498
TRANSFORM/MERGE/OUTPUT:  Processed 11 events so far, 1 events in buffer.
499
Traceback (most recent call last):
500
  File "/home/mice/MAUS/.maus_release/src/common_py/ErrorHandler.py", line 162, in HandleCppException
501
    raise CppError(error_message)
502
ErrorHandler.CppError: In branch daq_data
503
In branch unknown
504
Failed to recognise all json properties V1731  at ObjectProcessor<ObjectType>::JsonToCpp
505
TRANSFORM/MERGE/OUTPUT:  Processed 12 events so far, 1 events in buffer.
506
TRANSFORM/MERGE/OUTPUT:  Processed 13 events so far, 1 events in buffer.
507
TRANSFORM/MERGE/OUTPUT:  Processed 14 events so far, 1 events in buffer.
508
Traceback (most recent call last):
509
  File "/home/mice/MAUS/.maus_release/src/common_py/ErrorHandler.py", line 162, in HandleCppException
510
    raise CppError(error_message)
511
ErrorHandler.CppError: In branch daq_data
512
In branch unknown
513
Failed to recognise all json properties V1731  at ObjectProcessor<ObjectType>::JsonToCpp
514
TRANSFORM/MERGE/OUTPUT:  Processed 15 events so far, 1 events in buffer.
515
TRANSFORM/MERGE/OUTPUT:  Processed 16 events so far, 1 events in buffer.
516
TRANSFORM/MERGE/OUTPUT:  Processed 17 events so far, 1 events in buffer.
517
Traceback (most recent call last):
518
  File "/home/mice/MAUS/.maus_release/src/common_py/ErrorHandler.py", line 162, in HandleCppException
519
    raise CppError(error_message)
520
ErrorHandler.CppError: In branch daq_data
521
In branch unknown
522
Failed to recognise all json properties V1731  at ObjectProcessor<ObjectType>::JsonToCpp
523
TRANSFORM/MERGE/OUTPUT:  Processed 18 events so far, 1 events in buffer.
524
TRANSFORM/MERGE/OUTPUT:  Processed 19 events so far, 1 events in buffer.
525
TRANSFORM/MERGE/OUTPUT:  Processed 20 events so far, 1 events in buffer.
526
Traceback (most recent call last):
527
  File "/home/mice/MAUS/.maus_release/src/common_py/ErrorHandler.py", line 162, in HandleCppException
528
    raise CppError(error_message)
529
ErrorHandler.CppError: In branch daq_data
530
In branch unknown
531
Failed to recognise all json properties V1731  at ObjectProcessor<ObjectType>::JsonToCpp
532
Written 19 event(s) to file.
533
Written 1 event(s) to file.
534
Written 1 event(s) to file.
535
TRANSFORM/MERGE/OUTPUT:  Processed 21 events so far, 1 events in buffer.
536
TRANSFORM/MERGE/OUTPUT:  Processed 22 events so far, 1 events in buffer.
537
TRANSFORM/MERGE/OUTPUT:  Processed 23 events so far, 1 events in buffer.
538
TRANSFORM/MERGE/OUTPUT:  Processed 24 events so far, 1 events in buffer.
539
TRANSFORM/MERGE/OUTPUT:  Processed 25 events so far, 1 events in buffer.
540
TRANSFORM/MERGE/OUTPUT:  Processed 26 events so far, 0 events in buffer.
541
TRANSFORM: Shutting down transformer
542
MERGE: Shutting down merger
543
INPUT: Shutting down inputer
544
OUTPUT: Shutting down outputer
545
Clearing Globals
546
DONE
547
Error in <TGClient::TGClient>: can't open display "isis5817.sci.rl.ac.uk:0.0", switching to batch mode...
548
 In case you run from a remote ssh session, reconnect with ssh -Y
549
Placing Box of type Box position: (0,0,0) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 0.001 m^3,  material: lH2 mass (excl daughters): 0.0708 kg
550
Setting the phase 
551
Made 0 attempts to phase 0 cavities with 0 remaining
552
Failed to find event 1 in file.
553
Failed to find event 1 in file.
554
Failed to find event 19 in file.
555
Failed to find event 1 in file.
556
Failed to find event 1 in file.
557
Welcome to MAUS:
558
	Process ID (PID): 32409
559
	Program Arguments: ['/home/mice/MAUS/.maus_release/bin/utilities/root_to_json.py', '--input_root_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_offline_analysis.root', '--output_json_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_offline_analysis_IN.json', '--verbose_level', '1', '--header_and_footer_mode', 'dont_append']
560
	Version: MAUS release version 0.7.3
561
Initialising Globals
562
Initiating Execution
563
OUTPUT: Setting up outputer
564
Writing JobHeader...
565
INPUT: Setting up input
566
PIPELINE: Get event, TRANSFORM, MERGE, OUTPUT, repeat
567
HINT: MAUS will process 1 event only at first...
568
TRANSFORM/MERGE/OUTPUT:  Processed 1 events so far, 1 events in buffer.
569
TRANSFORM/MERGE/OUTPUT:  Processed 2 events so far, 1 events in buffer.
570
MERGE: Setting up merger
571
TRANSFORM: Setting up transformer
572
TRANSFORM/MERGE/OUTPUT:  Processed 3 events so far, 1 events in buffer.
573
TRANSFORM/MERGE/OUTPUT:  Processed 4 events so far, 1 events in buffer.
574
TRANSFORM/MERGE/OUTPUT:  Processed 5 events so far, 1 events in buffer.
575
TRANSFORM/MERGE/OUTPUT:  Processed 6 events so far, 1 events in buffer.
576
TRANSFORM/MERGE/OUTPUT:  Processed 7 events so far, 1 events in buffer.
577
TRANSFORM/MERGE/OUTPUT:  Processed 8 events so far, 1 events in buffer.
578
TRANSFORM/MERGE/OUTPUT:  Processed 9 events so far, 1 events in buffer.
579
TRANSFORM/MERGE/OUTPUT:  Processed 10 events so far, 1 events in buffer.
580
TRANSFORM/MERGE/OUTPUT:  Processed 11 events so far, 1 events in buffer.
581
TRANSFORM/MERGE/OUTPUT:  Processed 12 events so far, 1 events in buffer.
582
TRANSFORM/MERGE/OUTPUT:  Processed 13 events so far, 1 events in buffer.
583
TRANSFORM/MERGE/OUTPUT:  Processed 14 events so far, 1 events in buffer.
584
TRANSFORM/MERGE/OUTPUT:  Processed 15 events so far, 1 events in buffer.
585
TRANSFORM/MERGE/OUTPUT:  Processed 16 events so far, 1 events in buffer.
586
TRANSFORM/MERGE/OUTPUT:  Processed 17 events so far, 1 events in buffer.
587
TRANSFORM/MERGE/OUTPUT:  Processed 18 events so far, 1 events in buffer.
588
TRANSFORM/MERGE/OUTPUT:  Processed 19 events so far, 1 events in buffer.
589
TRANSFORM/MERGE/OUTPUT:  Processed 20 events so far, 1 events in buffer.
590
TRANSFORM/MERGE/OUTPUT:  Processed 21 events so far, 1 events in buffer.
591
TRANSFORM/MERGE/OUTPUT:  Processed 22 events so far, 1 events in buffer.
592
TRANSFORM/MERGE/OUTPUT:  Processed 23 events so far, 0 events in buffer.
593
TRANSFORM: Shutting down transformer
594
MERGE: Shutting down merger
595
INPUT: Shutting down inputer
596
OUTPUT: Shutting down outputer
597
Clearing Globals
598
DONE
599
Error in <TGClient::TGClient>: can't open display "isis5817.sci.rl.ac.uk:0.0", switching to batch mode...
600
 In case you run from a remote ssh session, reconnect with ssh -Y
601
Placing Box of type Box position: (0,0,0) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 0.001 m^3,  material: lH2 mass (excl daughters): 0.0708 kg
602
Setting the phase 
603
Made 0 attempts to phase 0 cavities with 0 remaining
604
Written 1 event(s) to file.
605
Written 1 event(s) to file.
606
Written 19 event(s) to file.
607
Written 1 event(s) to file.
608
Written 1 event(s) to file.
609
Welcome to MAUS:
610
	Process ID (PID): 32436
611
	Program Arguments: ['/home/mice/MAUS/.maus_release/bin/utilities/json_to_root.py', '--input_json_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_offline_analysis_IN.json', '--output_root_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_offline_analysis.root', '--verbose_level', '1', '--header_and_footer_mode', 'dont_append']
612
	Version: MAUS release version 0.7.3
613
Initialising Globals
614
Initiating Execution
615
OUTPUT: Setting up outputer
616
Writing JobHeader...
617
INPUT: Setting up input
618
PIPELINE: Get event, TRANSFORM, MERGE, OUTPUT, repeat
619
HINT: MAUS will process 1 event only at first...
620
TRANSFORM/MERGE/OUTPUT:  Processed 1 events so far, 1 events in buffer.
621
TRANSFORM/MERGE/OUTPUT:  Processed 2 events so far, 1 events in buffer.
622
MERGE: Setting up merger
623
TRANSFORM: Setting up transformer
624
TRANSFORM/MERGE/OUTPUT:  Processed 3 events so far, 1 events in buffer.
625
TRANSFORM/MERGE/OUTPUT:  Processed 4 events so far, 1 events in buffer.
626
TRANSFORM/MERGE/OUTPUT:  Processed 5 events so far, 1 events in buffer.
627
TRANSFORM/MERGE/OUTPUT:  Processed 6 events so far, 1 events in buffer.
628
TRANSFORM/MERGE/OUTPUT:  Processed 7 events so far, 1 events in buffer.
629
TRANSFORM/MERGE/OUTPUT:  Processed 8 events so far, 1 events in buffer.
630
TRANSFORM/MERGE/OUTPUT:  Processed 9 events so far, 1 events in buffer.
631
TRANSFORM/MERGE/OUTPUT:  Processed 10 events so far, 1 events in buffer.
632
TRANSFORM/MERGE/OUTPUT:  Processed 11 events so far, 1 events in buffer.
633
TRANSFORM/MERGE/OUTPUT:  Processed 12 events so far, 1 events in buffer.
634
TRANSFORM/MERGE/OUTPUT:  Processed 13 events so far, 1 events in buffer.
635
TRANSFORM/MERGE/OUTPUT:  Processed 14 events so far, 1 events in buffer.
636
TRANSFORM/MERGE/OUTPUT:  Processed 15 events so far, 1 events in buffer.
637
TRANSFORM/MERGE/OUTPUT:  Processed 16 events so far, 1 events in buffer.
638
TRANSFORM/MERGE/OUTPUT:  Processed 17 events so far, 1 events in buffer.
639
TRANSFORM/MERGE/OUTPUT:  Processed 18 events so far, 1 events in buffer.
640
TRANSFORM/MERGE/OUTPUT:  Processed 19 events so far, 1 events in buffer.
641
TRANSFORM/MERGE/OUTPUT:  Processed 20 events so far, 1 events in buffer.
642
TRANSFORM/MERGE/OUTPUT:  Processed 21 events so far, 1 events in buffer.
643
TRANSFORM/MERGE/OUTPUT:  Processed 22 events so far, 1 events in buffer.
644
TRANSFORM/MERGE/OUTPUT:  Processed 23 events so far, 0 events in buffer.
645
TRANSFORM: Shutting down transformer
646
MERGE: Shutting down merger
647
INPUT: Shutting down inputer
648
OUTPUT: Shutting down outputer
649
Clearing Globals
650
DONE
651
Error in <TGClient::TGClient>: can't open display "isis5817.sci.rl.ac.uk:0.0", switching to batch mode...
652
 In case you run from a remote ssh session, reconnect with ssh -Y
653
Placing Box of type Box position: (0,0,0) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 0.001 m^3,  material: lH2 mass (excl daughters): 0.0708 kg
654
Setting the phase 
655
Made 0 attempts to phase 0 cavities with 0 remaining
656
Failed to find event 1 in file.
657
Failed to find event 1 in file.
658
Failed to find event 19 in file.
659
Failed to find event 1 in file.
660
Failed to find event 1 in file.
661
Welcome to MAUS:
662
	Process ID (PID): 32462
663
	Program Arguments: ['/home/mice/MAUS/.maus_release/bin/utilities/root_to_json.py', '--input_root_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_offline_analysis.root', '--output_json_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_offline_analysis_OUT.json', '--verbose_level', '1', '--header_and_footer_mode', 'dont_append']
664
	Version: MAUS release version 0.7.3
665
Initialising Globals
666
Initiating Execution
667
OUTPUT: Setting up outputer
668
Writing JobHeader...
669
INPUT: Setting up input
670
PIPELINE: Get event, TRANSFORM, MERGE, OUTPUT, repeat
671
HINT: MAUS will process 1 event only at first...
672
TRANSFORM/MERGE/OUTPUT:  Processed 1 events so far, 1 events in buffer.
673
TRANSFORM/MERGE/OUTPUT:  Processed 2 events so far, 1 events in buffer.
674
MERGE: Setting up merger
675
TRANSFORM: Setting up transformer
676
TRANSFORM/MERGE/OUTPUT:  Processed 3 events so far, 1 events in buffer.
677
TRANSFORM/MERGE/OUTPUT:  Processed 4 events so far, 1 events in buffer.
678
TRANSFORM/MERGE/OUTPUT:  Processed 5 events so far, 1 events in buffer.
679
TRANSFORM/MERGE/OUTPUT:  Processed 6 events so far, 1 events in buffer.
680
TRANSFORM/MERGE/OUTPUT:  Processed 7 events so far, 1 events in buffer.
681
TRANSFORM/MERGE/OUTPUT:  Processed 8 events so far, 1 events in buffer.
682
TRANSFORM/MERGE/OUTPUT:  Processed 9 events so far, 1 events in buffer.
683
TRANSFORM/MERGE/OUTPUT:  Processed 10 events so far, 1 events in buffer.
684
TRANSFORM/MERGE/OUTPUT:  Processed 11 events so far, 1 events in buffer.
685
TRANSFORM/MERGE/OUTPUT:  Processed 12 events so far, 1 events in buffer.
686
TRANSFORM/MERGE/OUTPUT:  Processed 13 events so far, 1 events in buffer.
687
TRANSFORM/MERGE/OUTPUT:  Processed 14 events so far, 1 events in buffer.
688
TRANSFORM/MERGE/OUTPUT:  Processed 15 events so far, 1 events in buffer.
689
TRANSFORM/MERGE/OUTPUT:  Processed 16 events so far, 1 events in buffer.
690
TRANSFORM/MERGE/OUTPUT:  Processed 17 events so far, 1 events in buffer.
691
TRANSFORM/MERGE/OUTPUT:  Processed 18 events so far, 1 events in buffer.
692
TRANSFORM/MERGE/OUTPUT:  Processed 19 events so far, 1 events in buffer.
693
TRANSFORM/MERGE/OUTPUT:  Processed 20 events so far, 1 events in buffer.
694
TRANSFORM/MERGE/OUTPUT:  Processed 21 events so far, 1 events in buffer.
695
TRANSFORM/MERGE/OUTPUT:  Processed 22 events so far, 1 events in buffer.
696
TRANSFORM/MERGE/OUTPUT:  Processed 23 events so far, 0 events in buffer.
697
TRANSFORM: Shutting down transformer
698
MERGE: Shutting down merger
699
INPUT: Shutting down inputer
700
OUTPUT: Shutting down outputer
701
Clearing Globals
702
DONE
703
ok
704
Check that we can run simulate_mice, convert to root, convert back to ... Error in <TGClient::TGClient>: can't open display "isis5817.sci.rl.ac.uk:0.0", switching to batch mode...
705
 In case you run from a remote ssh session, reconnect with ssh -Y
706
Placing BeamLine.dat of type Box position: (0,0,-10283) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 209.641 m^3,  material: Galactic mass (excl daughters): 2.09641e-20 kg
707
Placing TrackerSolenoid0.dat of type Cylinder position: (0,0,-4783) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 4.2312 m^3,  material: Galactic mass (excl daughters): 4.2312e-22 kg
708
Placing AbsorberFocusCoil.dat68 of type Tube position: (0,0,-2750) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 1.37239 m^3,  material: Galactic mass (excl daughters): 1.37239e-22 kg
709
Placing RFCouplingCoilUp.dat of type Cylinder position: (0,0,-1375) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 2.56453 m^3,  material: Galactic mass (excl daughters): 2.56453e-22 kg
710
Placing AbsorberFocusCoil.dat81 of type Tube position: (0,0,0) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 1.37239 m^3,  material: Galactic mass (excl daughters): 1.37239e-22 kg
711
Placing RFCouplingCoilDown.dat of type Cylinder position: (0,0,1375) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 2.56453 m^3,  material: Galactic mass (excl daughters): 2.56453e-22 kg
712
Placing AbsorberFocusCoil.dat of type Tube position: (0,0,2750) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 1.37239 m^3,  material: Galactic mass (excl daughters): 1.37239e-22 kg
713
Placing SpecVirt.dat of type Cylinder position: (0,0,4783) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 2.82743e-08 m^3,  material: Galactic mass (excl daughters): 2.82743e-30 kg
714
Placing TrackerSolenoid1.dat of type Cylinder position: (0,0,4783) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 4.2312 m^3,  material: Galactic mass (excl daughters): 4.2312e-22 kg
715
Placing TOF2.dat of type Box position: (0,0,6524.5) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 0.5625 m^3,  material: AIR mass (excl daughters): 0.677694 kg
716
Setting the phase ....
717
Made 4 attempts to phase 8 cavities with 0 remaining
718
Solenoid Length: 198 Inner Radius: 258 Thickness: 52.8 Current Density: 1  scaleFactor: 104.612 position: (0,0,-3694) rotationVector: (0,0,1) angle: 0 name: Field1
719
Solenoid Length: 197 Inner Radius: 258 Thickness: 26.4 Current Density: 1  scaleFactor: 161.3 position: (0,0,-4134.5) rotationVector: (0,0,1) angle: 0 name: Field2
720
Solenoid Length: 110 Inner Radius: 258 Thickness: 61.6 Current Density: 1  scaleFactor: 136.8 position: (0,0,-4534.5) rotationVector: (0,0,1) angle: 0 name: Field3
721
Solenoid Length: 1294 Inner Radius: 258 Thickness: 22 Current Density: 1  scaleFactor: 146.9 position: (0,0,-5284) rotationVector: (0,0,1) angle: 0 name: Field4
722
Solenoid Length: 110 Inner Radius: 258 Thickness: 68.2 Current Density: 1  scaleFactor: 142.492 position: (0,0,-6034.5) rotationVector: (0,0,1) angle: 0 name: Field5
723
Solenoid Length: 210 Inner Radius: 263 Thickness: 84 Current Density: 1  scaleFactor: 113.95 position: (0,0,-2955) rotationVector: (0,0,1) angle: 0 name: Field6
724
Solenoid Length: 210 Inner Radius: 263 Thickness: 84 Current Density: 1  scaleFactor: -113.95 position: (0,0,-2545) rotationVector: (0,0,1) angle: 0 name: Field7
725
Solenoid Length: 250 Inner Radius: 725 Thickness: 116 Current Density: 1  scaleFactor: -96.21 position: (0,0,-1375) rotationVector: (0,0,1) angle: 0 name: Field8
726
Solenoid Length: 210 Inner Radius: 263 Thickness: 84 Current Density: 1  scaleFactor: -113.95 position: (0,0,-205) rotationVector: (0,0,1) angle: 0 name: Field9
727
Solenoid Length: 210 Inner Radius: 263 Thickness: 84 Current Density: 1  scaleFactor: 113.95 position: (0,0,205) rotationVector: (0,0,1) angle: 0 name: Field10
728
Solenoid Length: 250 Inner Radius: 725 Thickness: 116 Current Density: 1  scaleFactor: 96.21 position: (0,0,1375) rotationVector: (0,0,1) angle: 0 name: Field11
729
Solenoid Length: 210 Inner Radius: 263 Thickness: 84 Current Density: 1  scaleFactor: 113.95 position: (0,0,2545) rotationVector: (0,0,1) angle: 0 name: Field12
730
Solenoid Length: 210 Inner Radius: 263 Thickness: 84 Current Density: 1  scaleFactor: -113.95 position: (0,0,2955) rotationVector: (0,0,1) angle: 0 name: Field13
731
Solenoid Length: 198 Inner Radius: 258 Thickness: 52.8 Current Density: 1  scaleFactor: 104.612 position: (-1.33364e-13,0,3669.5) rotationVector: (0,-1,0) angle: 180 name: Field14
732
Solenoid Length: 197 Inner Radius: 258 Thickness: 26.4 Current Density: 1  scaleFactor: 161.3 position: (-7.94183e-14,0,4110) rotationVector: (0,-1,0) angle: 180 name: Field15
733
Solenoid Length: 110 Inner Radius: 258 Thickness: 61.6 Current Density: 1  scaleFactor: 136.8 position: (-3.04325e-14,0,4510) rotationVector: (0,-1,0) angle: 180 name: Field16
734
Solenoid Length: 1294 Inner Radius: 258 Thickness: 22 Current Density: 1  scaleFactor: 146.9 position: (6.13548e-14,0,5259.5) rotationVector: (0,-1,0) angle: 180 name: Field17
735
Solenoid Length: 110 Inner Radius: 258 Thickness: 68.2 Current Density: 1  scaleFactor: 142.492 position: (1.53265e-13,0,6010) rotationVector: (0,-1,0) angle: 180 name: Field18
736
Multipole Order: 4 Length: 2000 Magnitude: 1e-06 BendingRadius: 0 Height: 500 Width: 500 EndField: Tanh scaleFactor: 1.293 position: (0,0,-10959.5) rotationVector: (0,0,1) angle: 0 name: Field27
737
Multipole Order: 4 Length: 2000 Magnitude: 1e-06 BendingRadius: 0 Height: 500 Width: 500 EndField: Tanh scaleFactor: -1.293 position: (0,0,-9799.45) rotationVector: (0,0,1) angle: 0 name: Field28
738
Multipole Order: 4 Length: 2000 Magnitude: 1e-06 BendingRadius: 0 Height: 500 Width: 500 EndField: Tanh scaleFactor: 1.293 position: (0,0,-8639.45) rotationVector: (0,0,1) angle: 0 name: Field29
739
RFFieldMap Length: 430 PeakField: 0.009 Delay: 20.4494 Frequency: 0.20125 scaleFactor: 1 position: (0,0,-1140.75) rotationVector: (0,0,1) angle: 0 name: Field19
740
RFFieldMap Length: 430 PeakField: 0.009 Delay: 18.6388 Frequency: 0.20125 scaleFactor: 1 position: (0,0,-1609.25) rotationVector: (0,0,1) angle: 0 name: Field20
741
RFFieldMap Length: 430 PeakField: 0.009 Delay: 22.2516 Frequency: 0.20125 scaleFactor: 1 position: (0,0,-672.25) rotationVector: (0,0,1) angle: 0 name: Field21
742
RFFieldMap Length: 430 PeakField: 0.009 Delay: 16.8196 Frequency: 0.20125 scaleFactor: 1 position: (0,0,-2077.75) rotationVector: (0,0,1) angle: 0 name: Field22
743
RFFieldMap Length: 430 PeakField: 0.009 Delay: 30.9696 Frequency: 0.20125 scaleFactor: 1 position: (0,0,1609.25) rotationVector: (0,0,1) angle: 0 name: Field23
744
RFFieldMap Length: 430 PeakField: 0.009 Delay: 29.1894 Frequency: 0.20125 scaleFactor: 1 position: (0,0,1140.75) rotationVector: (0,0,1) angle: 0 name: Field24
745
RFFieldMap Length: 430 PeakField: 0.009 Delay: 32.7431 Frequency: 0.20125 scaleFactor: 1 position: (0,0,2077.75) rotationVector: (0,0,1) angle: 0 name: Field25
746
RFFieldMap Length: 430 PeakField: 0.009 Delay: 27.4019 Frequency: 0.20125 scaleFactor: 1 position: (0,0,672.25) rotationVector: (0,0,1) angle: 0 name: Field26
747
Written 1 event(s) to file.
748
Written 1 event(s) to file.
749
Written 3 event(s) to file.
750
Written 1 event(s) to file.
751
Written 1 event(s) to file.
752
Welcome to MAUS:
753
	Process ID (PID): 32488
754
	Program Arguments: ['/home/mice/MAUS/.maus_release/bin/simulate_mice.py', '--configuration_file', '/home/mice/MAUS/.maus_release/tests/integration/test_utilities/test_root_io/root_io_mc_config.py', '--output_root_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_simulate_mice.root']
755
	Version: MAUS release version 0.7.3
756
Initialising Globals
757
Initiating Execution
758
OUTPUT: Setting up outputer
759
Writing JobHeader...
760
INPUT: Setting up input
761
PIPELINE: Get event, TRANSFORM, MERGE, OUTPUT, repeat
762
HINT: MAUS will process 1 event only at first...
763
MERGE: Setting up merger
764
TRANSFORM: Setting up transformer
765
TRANSFORM/MERGE/OUTPUT:  Processed 1 events so far, 1 events in buffer.
766
TRANSFORM/MERGE/OUTPUT:  Processed 2 events so far, 0 events in buffer.
767
  Missing an end_of_run spill...
768
  ...creating one to flush the mergers!
769
TRANSFORM: Shutting down transformer
770
MERGE: Shutting down merger
771
INPUT: Shutting down inputer
772
OUTPUT: Shutting down outputer
773
Clearing Globals
774
DONE
775
Error in <TGClient::TGClient>: can't open display "isis5817.sci.rl.ac.uk:0.0", switching to batch mode...
776
 In case you run from a remote ssh session, reconnect with ssh -Y
777
Placing Box of type Box position: (0,0,0) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 0.001 m^3,  material: lH2 mass (excl daughters): 0.0708 kg
778
Setting the phase 
779
Made 0 attempts to phase 0 cavities with 0 remaining
780
Failed to find event 1 in file.
781
Failed to find event 1 in file.
782
Failed to find event 3 in file.
783
Failed to find event 1 in file.
784
Failed to find event 1 in file.
785
Welcome to MAUS:
786
	Process ID (PID): 1149
787
	Program Arguments: ['/home/mice/MAUS/.maus_release/bin/utilities/root_to_json.py', '--input_root_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_simulate_mice.root', '--output_json_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_simulate_mice_IN.json', '--verbose_level', '1', '--header_and_footer_mode', 'dont_append']
788
	Version: MAUS release version 0.7.3
789
Initialising Globals
790
Initiating Execution
791
OUTPUT: Setting up outputer
792
Writing JobHeader...
793
INPUT: Setting up input
794
PIPELINE: Get event, TRANSFORM, MERGE, OUTPUT, repeat
795
HINT: MAUS will process 1 event only at first...
796
TRANSFORM/MERGE/OUTPUT:  Processed 1 events so far, 1 events in buffer.
797
TRANSFORM/MERGE/OUTPUT:  Processed 2 events so far, 1 events in buffer.
798
MERGE: Setting up merger
799
TRANSFORM: Setting up transformer
800
TRANSFORM/MERGE/OUTPUT:  Processed 3 events so far, 1 events in buffer.
801
TRANSFORM/MERGE/OUTPUT:  Processed 4 events so far, 1 events in buffer.
802
TRANSFORM/MERGE/OUTPUT:  Processed 5 events so far, 1 events in buffer.
803
TRANSFORM/MERGE/OUTPUT:  Processed 6 events so far, 1 events in buffer.
804
TRANSFORM/MERGE/OUTPUT:  Processed 7 events so far, 0 events in buffer.
805
TRANSFORM: Shutting down transformer
806
MERGE: Shutting down merger
807
INPUT: Shutting down inputer
808
OUTPUT: Shutting down outputer
809
Clearing Globals
810
DONE
811
Error in <TGClient::TGClient>: can't open display "isis5817.sci.rl.ac.uk:0.0", switching to batch mode...
812
 In case you run from a remote ssh session, reconnect with ssh -Y
813
Placing Box of type Box position: (0,0,0) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 0.001 m^3,  material: lH2 mass (excl daughters): 0.0708 kg
814
Setting the phase 
815
Made 0 attempts to phase 0 cavities with 0 remaining
816
Written 1 event(s) to file.
817
Written 1 event(s) to file.
818
Written 3 event(s) to file.
819
Written 1 event(s) to file.
820
Written 1 event(s) to file.
821
Welcome to MAUS:
822
	Process ID (PID): 1441
823
	Program Arguments: ['/home/mice/MAUS/.maus_release/bin/utilities/json_to_root.py', '--input_json_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_simulate_mice_IN.json', '--output_root_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_simulate_mice.root', '--verbose_level', '1', '--header_and_footer_mode', 'dont_append']
824
	Version: MAUS release version 0.7.3
825
Initialising Globals
826
Initiating Execution
827
OUTPUT: Setting up outputer
828
Writing JobHeader...
829
INPUT: Setting up input
830
PIPELINE: Get event, TRANSFORM, MERGE, OUTPUT, repeat
831
HINT: MAUS will process 1 event only at first...
832
TRANSFORM/MERGE/OUTPUT:  Processed 1 events so far, 1 events in buffer.
833
TRANSFORM/MERGE/OUTPUT:  Processed 2 events so far, 1 events in buffer.
834
MERGE: Setting up merger
835
TRANSFORM: Setting up transformer
836
TRANSFORM/MERGE/OUTPUT:  Processed 3 events so far, 1 events in buffer.
837
TRANSFORM/MERGE/OUTPUT:  Processed 4 events so far, 1 events in buffer.
838
TRANSFORM/MERGE/OUTPUT:  Processed 5 events so far, 1 events in buffer.
839
TRANSFORM/MERGE/OUTPUT:  Processed 6 events so far, 1 events in buffer.
840
TRANSFORM/MERGE/OUTPUT:  Processed 7 events so far, 0 events in buffer.
841
TRANSFORM: Shutting down transformer
842
MERGE: Shutting down merger
843
INPUT: Shutting down inputer
844
OUTPUT: Shutting down outputer
845
Clearing Globals
846
DONE
847
Error in <TGClient::TGClient>: can't open display "isis5817.sci.rl.ac.uk:0.0", switching to batch mode...
848
 In case you run from a remote ssh session, reconnect with ssh -Y
849
Placing Box of type Box position: (0,0,0) mm, rotationVector: (0,0,1) angle: 0 degrees, volume (incl daughters): 0.001 m^3,  material: lH2 mass (excl daughters): 0.0708 kg
850
Setting the phase 
851
Made 0 attempts to phase 0 cavities with 0 remaining
852
Failed to find event 1 in file.
853
Failed to find event 1 in file.
854
Failed to find event 3 in file.
855
Failed to find event 1 in file.
856
Failed to find event 1 in file.
857
Welcome to MAUS:
858
	Process ID (PID): 1474
859
	Program Arguments: ['/home/mice/MAUS/.maus_release/bin/utilities/root_to_json.py', '--input_root_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_simulate_mice.root', '--output_json_file_name', '/home/mice/MAUS/.maus_release/tmp/test_root_io_simulate_mice_OUT.json', '--verbose_level', '1', '--header_and_footer_mode', 'dont_append']
860
	Version: MAUS release version 0.7.3
861
Initialising Globals
862
Initiating Execution
863
OUTPUT: Setting up outputer
864
Writing JobHeader...
865
INPUT: Setting up input
866
PIPELINE: Get event, TRANSFORM, MERGE, OUTPUT, repeat
867
HINT: MAUS will process 1 event only at first...
868
TRANSFORM/MERGE/OUTPUT:  Processed 1 events so far, 1 events in buffer.
869
TRANSFORM/MERGE/OUTPUT:  Processed 2 events so far, 1 events in buffer.
870
MERGE: Setting up merger
871
TRANSFORM: Setting up transformer
872
TRANSFORM/MERGE/OUTPUT:  Processed 3 events so far, 1 events in buffer.
873
TRANSFORM/MERGE/OUTPUT:  Processed 4 events so far, 1 events in buffer.
874
TRANSFORM/MERGE/OUTPUT:  Processed 5 events so far, 1 events in buffer.
875
TRANSFORM/MERGE/OUTPUT:  Processed 6 events so far, 1 events in buffer.
876
TRANSFORM/MERGE/OUTPUT:  Processed 7 events so far, 0 events in buffer.
877
TRANSFORM: Shutting down transformer
878
MERGE: Shutting down merger
879
INPUT: Shutting down inputer
880
OUTPUT: Shutting down outputer
881
Clearing Globals
882
DONE
883
ok
884

    
885
======================================================================
886
FAIL: Checks that no other program is grabbing the MAUS help function
887
----------------------------------------------------------------------
888
Traceback (most recent call last):
889
  File "/home/mice/MAUS/.maus_release/tests/integration/test_simulation/test_help/test_help.py", line 23, in test_maus_help
890
    msg='Found\n'+first_line+'\nexpected\n'+assumed_output)
891
AssertionError: Found
892
Error in <TGClient::TGClient>: can't open display "isis5817.sci.rl.ac.uk:0.0", switching to batch mode...
893

    
894
expected
895
usage: simulate_mice.py [-h]
896

    
897
======================================================================
898
FAIL: Test that the GRID batch script works
899
----------------------------------------------------------------------
900
Traceback (most recent call last):
901
  File "/home/mice/MAUS/.maus_release/tests/integration/test_utilities/test_execute_against_data/test_execute_against_data.py", line 161, in test_main_success
902
    self.__check_recon_file()
903
  File "/home/mice/MAUS/.maus_release/tests/integration/test_utilities/test_execute_against_data/test_execute_against_data.py", line 124, in __check_recon_file
904
    self.assertEqual(data.GetSpill().GetDaqEventType(), "physics_event")
905
AssertionError: 'end_of_burst' != 'physics_event'
906
-------------------- >> begin captured stdout << ---------------------
907
Cleaning test directory
908
Found 03541.tar so not going to download
909
removing file /home/mice/MAUS/.maus_release/tmp/test_batch/03541_recon.root
910
removing file /home/mice/MAUS/.maus_release/tmp/test_batch/batch.log
911
removing file /home/mice/MAUS/.maus_release/tmp/test_batch/download.log
912
removing file /home/mice/MAUS/.maus_release/tmp/test_batch/03541_sim.root
913
removing file /home/mice/MAUS/.maus_release/tmp/test_batch/sim.log
914
removing dir /home/mice/MAUS/.maus_release/tmp/test_batch/downloads
915
removing file /home/mice/MAUS/.maus_release/tmp/test_batch/OnScalers.03541.txt
916
removing file /home/mice/MAUS/.maus_release/tmp/test_batch/reco.log
917
removing file /home/mice/MAUS/.maus_release/tmp/test_batch/03541.md5
918
removing file /home/mice/MAUS/.maus_release/tmp/test_batch/OnScalers.03541.root
919
removing file /home/mice/MAUS/.maus_release/tmp/test_batch/OnMon.03541.root
920
removing file /home/mice/MAUS/.maus_release/tmp/test_batch/03541.000
921
Unpacking for testing
922

    
923
--------------------- >> end captured stdout << ----------------------
924

    
925
----------------------------------------------------------------------
926
Ran 44 tests in 3732.187s
927

    
928
FAILED (SKIP=12, failures=2)
929
 Kolmo Prob  h1 = tof01_ref, sum bin content =177  effective entries =177
930
 Kolmo Prob  h2 = tof01, sum bin content =218  effective entries =218
931
 Kolmo Prob     = 0.990583, Max Dist = 0.0443943
(1-1/8)